update the whole protocol

ReproNim · Jan 3, 2024 · 018296e · 018296e
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commit 018296e
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Showing 23 changed files with 767 additions and 49 deletions.
diff --git a/activities/0_audio/audio_check_schema b/activities/0_audio/audio_check_schema
@@ -0,0 +1,31 @@
+{
+    "@context": [
+        "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+        {
+            "voice": "https://raw.githubusercontent.com/ReproNim/reproschema-library/43e7afab312596708c0ad4dfd45b69c8904088ae/activities/VoiceTask/items/"
+        }
+    ],
+    "@type": "reproschema:Activity",
+    "@id": "audio_check_schema",
+    "prefLabel": "Audio check",
+    "description": "activity to test the subject's microphone and audio collection",
+    "preamble": "",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "ui": {
+        "addProperties": [
+            {
+                "variableName": "audio_check",
+                "isAbout": "voice:audio_check"
+            }
+        ],
+        "order": [
+            "voice:audio_check"
+        ],
+        "shuffle": false,
+        "allow": [
+			"reproschema:AutoAdvance",
+			"reproschema:AllowExport"
+		]
+    }
+}
diff --git a/activities/1_demographics/demographics_schema b/activities/1_demographics/demographics_schema
@@ -0,0 +1,94 @@
+{
+    "@context": [
+        "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+        {
+            "demo": "https://raw.githubusercontent.com/ReproNim/reproschema-library/43e7afab312596708c0ad4dfd45b69c8904088ae/activities/demographics_and_background_information_v1/items/"
+        }
+    ],
+    "@type": "reproschema:Activity",
+    "@id": "demographics_schema",
+    "prefLabel": "Demographics",
+    "description": "activity to collect demographics and background of the subject",
+    "preamble": "This activity will ask for your demographics and background.",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "ui": {
+        "addProperties": [
+            {
+                "variableName": "year_of_birth",
+                "isAbout": "demo:year_of_birth"
+            },
+            {
+                "variableName": "sex",
+                "isAbout": "demo:sex"
+            },
+            {
+                "variableName": "gender_identity",
+                "isAbout": "demo:gender_identity"
+            },
+            {
+                "variableName": "gender_other_specify",
+                "isAbout": "demo:other_specify",
+                "isVis": "gender_identity.includes(-1)"
+            },
+            {
+                "variableName": "sexual_orientation",
+                "isAbout": "demo:sexual_orientation"
+            },
+            {
+                "variableName": "sexual_orientation_other_specify",
+                "isAbout": "demo:other_specify",
+                "isVis": "sexual_orientation.includes(-1)"
+            },
+            {
+                "variableName": "ethnic_category",
+                "isAbout": "demo:ethnic_category"
+            },
+            {
+                "variableName": "race_ethnicity",
+                "isAbout": "demo:race_ethnicity"
+            },
+            {
+                "variableName": "race_ethnicity_global",
+                "isAbout": "demo:race_ethnicity_global"
+            },
+            {
+                "variableName": "race_ethnicity_global_other",
+                "isAbout": "demo:race_ethnicity_global_other",
+                "isVis": "race_ethnicity_global.includes(-1)"
+            },
+            {
+                "variableName": "native_language_multiple",
+                "isAbout": "demo:native_language_multiple"
+            },
+            {
+                "variableName": "dialect",
+                "isAbout": "demo:dialect"
+            },
+            {
+                "variableName": "us_state_of_residence",
+                "isAbout": "demo:us_state_of_residence"
+            }
+        ],
+        "order": [
+            "demo:year_of_birth",
+            "demo:sex",
+            "demo:gender_identity",
+            "demo:other_specify",
+            "demo:sexual_orientation",
+            "demo:other_specify",
+            "demo:ethnic_category",
+            "demo:race_ethnicity",
+            "demo:race_ethnicity_global",
+            "demo:race_ethnicity_global_other",
+            "demo:native_language_multiple",
+            "demo:dialect",
+            "demo:us_state_of_residence"
+        ],
+        "shuffle": false,
+        "allow": [
+			"reproschema:AutoAdvance",
+			"reproschema:AllowExport"
+		]
+    }
+}
diff --git a/activities/2_psychological/psychological_questionnaire_schema b/activities/2_psychological/psychological_questionnaire_schema
@@ -0,0 +1,67 @@
+{
+    "@context": [
+        "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+        {
+            "activities": "https://raw.githubusercontent.com/ReproNim/reproschema-library/43e7afab312596708c0ad4dfd45b69c8904088ae/activities/",
+            "demo": "https://raw.githubusercontent.com/ReproNim/reproschema-library/43e7afab312596708c0ad4dfd45b69c8904088ae/activities/demographics_and_background_information_v1/items/"
+        }
+    ],
+    "@type": "reproschema:Activity",
+    "@id": "psychological_questionnaire_schema",
+    "prefLabel": "Psychological questionnaire",
+    "description": "activity to collect psychological data of the participant",
+    "preamble": "This activity will ask you to rate your psychological states",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "ui": {
+        "addProperties": [
+            {
+                "variableName": "phq-9",
+                "isAbout": "activities:PHQ-9/PHQ9_schema"
+            },
+            {
+                "variableName": "gad-7",
+                "isAbout": "activities:GAD7/GAD7_schema"
+            },
+            {
+                "variableName": "pc-ptsd-5",
+                "isAbout": "activities:PC-PTSD-5/PC-PTSD-5_schema"
+            },
+            {
+                "variableName": "clinical_history_psychiatry",
+                "isAbout": "demo:clinical_history_psychiatry"
+            },
+            {
+                "variableName": "clinical_history_psychiatry_other",
+                "isAbout": "demo:clinical_history_psychiatry_other"
+            },
+            {
+                "variableName": "clinical_history_psychiatry_current",
+                "isAbout": "demo:clinical_history_psychiatry_current"
+            },
+            {
+                "variableName": "clinical_history_psychiatry_current_only_some",
+                "isAbout": "demo:clinical_history_psychiatry_current_only_some"
+            },
+            {
+                "variableName": "clinical_history_psychiatry_current_only_some_other",
+                "isAbout": "demo:clinical_history_psychiatry_current_only_some_other"
+            }
+        ],
+        "order": [
+            "activities:PHQ-9/PHQ9_schema",
+            "activities:GAD7/GAD7_schema",
+            "activities:PC-PTSD-5/PC-PTSD-5_schema",
+            "demo:clinical_history_psychiatry",
+            "demo:clinical_history_psychiatry_other",
+            "demo:clinical_history_psychiatry_current",
+            "demo:clinical_history_psychiatry_current_only_some",
+            "demo:clinical_history_psychiatry_current_only_some_other"
+        ],
+        "shuffle": false,
+        "allow": [
+			"reproschema:AutoAdvance",
+			"reproschema:AllowExport"
+		]
+    }
+}
diff --git a/activities/3_clinical/clinical_schema b/activities/3_clinical/clinical_schema
@@ -0,0 +1,67 @@
+{
+    "@context": [
+        "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+        {
+            "demo": "https://raw.githubusercontent.com/ReproNim/reproschema-library/43e7afab312596708c0ad4dfd45b69c8904088ae/activities/demographics_and_background_information_v1/items/"
+        }
+    ],
+    "@type": "reproschema:Activity",
+    "@id": "clinical_schema",
+    "prefLabel": "Clinical background",
+    "description": "activity to collect clinical background of the subject",
+    "preamble": "This activity will ask for your clinical background.",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "ui": {
+        "addProperties": [
+            {
+                "variableName": "smoking",
+                "isAbout": "demo:smoking"
+            },
+            {
+                "variableName": "alcohol_consumption",
+                "isAbout": "items/alcohol_consumption"
+            },
+            {
+                "variableName": "alcohol_consumption_count",
+                "isAbout": "items/alcohol_consumption_count"
+            },
+            {
+                "variableName": "dental_oral",
+                "isAbout": "items/dental_oral"
+            },
+            {
+                "variableName": "allergies_cold",
+                "isAbout": "items/allergies_cold"
+            },
+            {
+                "variableName": "clinical_history_voice",
+                "isAbout": "demo:clinical_history_voice"
+            },
+            {
+                "variableName": "clinical_history_voice_other",
+                "isAbout": "demo:clinical_history_voice_other",
+                "isVis": "clinical_history_voice.includes(-1)"
+            },
+            {
+                "variableName": "clinical_history_neurology",
+                "isAbout": "demo:clinical_history_neurology"
+            }
+        ],
+        "order": [
+            "demo:smoking",
+            "items/alcohol_consumption",
+            "items/alcohol_consumption_count",
+            "items/dental_oral",
+            "items/allergies_cold",
+            "demo:clinical_history_voice",
+            "demo:clinical_history_voice_other",
+            "demo:clinical_history_neurology"
+        ],
+        "shuffle": false,
+        "allow": [
+			"reproschema:AutoAdvance",
+			"reproschema:AllowExport"
+		]
+    }
+}
diff --git a/activities/3_clinical/items/alcohol_consumption b/activities/3_clinical/items/alcohol_consumption
@@ -0,0 +1,36 @@
+{
+    "@context": "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+    "@type": "reproschema:Field",
+    "@id": "alcohol_consumption",
+    "prefLabel": "Alcohol consumption",
+    "description": "schema to ask whether the participant drank alcohol",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "question": {
+	    "en": "Have you drunk alcohol today?",
+	    "es": "¿Has bebido alcohol hoy?"
+    },
+    "ui": {
+        "inputType": "radio"
+    },
+    "responseOptions": {
+        "valueType": "xsd:string",
+	      "multipleChoice": false,
+        "choices": [
+            {
+                "name": {
+	                "en": "Yes",
+	                "es": "Sí"
+                },
+                "value": 1
+            },
+            {
+                "name": {
+	                "en": "No",
+	                "es": "No"
+                },
+                "value": 2
+            }
+        ]
+    }
+}
diff --git a/activities/3_clinical/items/alcohol_consumption_count b/activities/3_clinical/items/alcohol_consumption_count
@@ -0,0 +1,19 @@
+{
+    "@context": "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+    "@type": "reproschema:Field",
+    "@id": "alcohol_consumption_count",
+    "prefLabel": "Number of drinks",
+    "description": "schema to ask for the number of alcoholic drinks the participant had today",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "question": {
+	    "en": "How many drinks containing alcohol have you had?",
+	    "es": "¿Cuántas bebidas que contienen alcohol has tomado?"
+    },
+    "ui": {
+        "inputType": "number"
+    },
+    "responseOptions": {
+        "valueType": "xsd:integer"
+    }
+}
diff --git a/activities/3_clinical/items/allergies_cold b/activities/3_clinical/items/allergies_cold
@@ -0,0 +1,19 @@
+{
+    "@context": "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+    "@type": "reproschema:Field",
+    "@id": "allergies_cold",
+    "prefLabel": "Allergies or cold-like symptoms",
+    "description": "schema to ask about any allergies or cold-like symptoms",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "question": {
+	    "en": "Do you currently have allergies or cold-like symptoms affecting speech?",
+	    "es": "¿Actualmente tiene alergias o síntomas parecidos a los del resfriado que afectan el habla?"
+    },
+    "ui": {
+        "inputType": "text"
+    },
+    "responseOptions": {
+        "valueType": "xsd:string"
+    }
+}
diff --git a/activities/3_clinical/items/dental_oral b/activities/3_clinical/items/dental_oral
@@ -0,0 +1,19 @@
+{
+    "@context": "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+    "@type": "reproschema:Field",
+    "@id": "dental_oral",
+    "prefLabel": "Dental or oral problems",
+    "description": "schema to ask about any dental or oral problems affecting speech",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "question": {
+	    "en": "Do you have any oral or dental problems affecting speech?",
+	    "es": "¿Tiene algún problema oral o dental que afecte el habla?"
+    },
+    "ui": {
+        "inputType": "text"
+    },
+    "responseOptions": {
+        "valueType": "xsd:string"
+    }
+}
diff --git a/activities/3_clinical/items/height b/activities/3_clinical/items/height
@@ -0,0 +1,19 @@
+{
+    "@context": "https://raw.githubusercontent.com/ReproNim/reproschema/1.0.0-rc4/contexts/generic",
+    "@type": "reproschema:Field",
+    "@id": "height",
+    "prefLabel": "Height",
+    "description": "schema to ask for the height of the participant",
+    "schemaVersion": "1.0.0-rc4",
+    "version": "0.0.1",
+    "question": {
+	    "en": "What is your height?",
+	    "es": "¿Cuál es su altura?"
+    },
+    "ui": {
+        "inputType": "text"
+    },
+    "responseOptions": {
+        "valueType": "xsd:string"
+    }
+}