Add scicat backend test unit test helper.

.github/workflows/integration.yml

@@ -28,4 +28,5 @@ jobs:
       - run: docker-compose version
       - run: docker-compose -f tests/docker-compose-file-writer.yml up -d
       - run: python tests/_scicat_ingestor.py -c resources/config.sample.json --verbose
+      - run: pytest --backend-tests
       - run: docker-compose -f tests/docker-compose-file-writer.yml down

requirements/basetest.in

@@ -2,3 +2,4 @@
 # Do not make an environment from this file, use test.txt instead!
 
 pytest
+scitacean

requirements/basetest.txt

@@ -1,15 +1,56 @@
-# SHA1:0eaa389e1fdb3a1917c0f987514bd561be5718ee
+# SHA1:e820b087b52d0475bec279a238bcec7a1730ea9d
 #
 # This file is autogenerated by pip-compile-multi
 # To update, run:
 #
 #    pip-compile-multi
 #
+annotated-types==0.7.0
+    # via pydantic
+anyio==4.4.0
+    # via httpx
+certifi==2024.7.4
+    # via
+    #   httpcore
+    #   httpx
+dnspython==2.6.1
+    # via email-validator
+email-validator==2.2.0
+    # via scitacean
+h11==0.14.0
+    # via httpcore
+httpcore==1.0.5
+    # via httpx
+httpx==0.27.0
+    # via scitacean
+idna==3.7
+    # via
+    #   anyio
+    #   email-validator
+    #   httpx
 iniconfig==2.0.0
     # via pytest
 packaging==24.1
     # via pytest
 pluggy==1.5.0
     # via pytest
+pydantic==2.8.2
+    # via scitacean
+pydantic-core==2.20.1
+    # via pydantic
 pytest==8.3.2
     # via -r basetest.in
+python-dateutil==2.9.0.post0
+    # via scitacean
+scitacean==24.5.0
+    # via -r basetest.in
+six==1.16.0
+    # via python-dateutil
+sniffio==1.3.1
+    # via
+    #   anyio
+    #   httpx
+typing-extensions==4.12.2
+    # via
+    #   pydantic
+    #   pydantic-core

requirements/ci.txt

@@ -36,7 +36,7 @@ pyproject-api==1.7.1
     # via tox
 smmap==5.0.1
     # via gitdb
-tox==4.17.0
+tox==4.17.1
     # via -r ci.in
 virtualenv==20.26.3
     # via tox

requirements/dev.txt

@@ -10,8 +10,6 @@
 -r mypy.txt
 -r static.txt
 -r test.txt
-annotated-types==0.7.0
-    # via pydantic
 build==1.2.1
     # via pip-tools
 click==8.1.7
@@ -20,12 +18,18 @@ click==8.1.7
     #   pip-tools
 copier==9.3.1
     # via -r dev.in
-dunamai==1.21.2
+dunamai==1.22.0
     # via copier
 funcy==2.0
     # via copier
+jinja2==3.1.4
+    # via
+    #   copier
+    #   jinja2-ansible-filters
 jinja2-ansible-filters==1.3.2
     # via copier
+markupsafe==2.1.5
+    # via jinja2
 pathspec==0.12.1
     # via copier
 pip-compile-multi==2.6.4
@@ -36,10 +40,6 @@ plumbum==1.8.3
     # via copier
 prompt-toolkit==3.0.36
     # via questionary
-pydantic==2.8.2
-    # via copier
-pydantic-core==2.20.1
-    # via pydantic
 pyproject-hooks==1.1.0
     # via
     #   build
@@ -50,7 +50,7 @@ toposort==1.10
     # via pip-compile-multi
 wcwidth==0.2.13
     # via prompt-toolkit
-wheel==0.43.0
+wheel==0.44.0
     # via pip-tools
 
 # The following packages are considered to be unsafe in a requirements file:

requirements/mypy.txt

@@ -10,5 +10,3 @@ mypy==1.11.1
     # via -r mypy.in
 mypy-extensions==1.0.0
     # via mypy
-typing-extensions==4.12.2
-    # via mypy

requirements/nightly.txt

@@ -6,8 +6,6 @@
 #    pip-compile-multi
 #
 -r basetest.txt
-certifi==2024.7.4
-    # via requests
 charset-normalizer==3.3.2
     # via requests
 confluent-kafka==2.5.0
@@ -20,8 +18,6 @@ graypy==2.1.0
     # via -r nightly.in
 h5py==3.11.0
     # via -r nightly.in
-idna==3.7
-    # via requests
 kafka-python==2.0.2
     # via -r nightly.in
 markdown-it-py==3.0.0

tests/conftest.py

@@ -0,0 +1,8 @@
+import pytest
+from scitacean.testing.backend import add_pytest_option as add_backend_option
+
+pytest_plugins = ("scitacean.testing.backend.fixtures",)
+
+
+def pytest_addoption(parser: pytest.Parser) -> None:
+    add_backend_option(parser)

tests/test_scicat_communication.py

@@ -0,0 +1,40 @@
+import logging
+
+from scicat_communication import create_scicat_dataset
+from scicat_configuration import SciCatOptions
+from scicat_dataset import ScicatDataset, scicat_dataset_to_dict
+
+SAMPLE_OPTION = SciCatOptions(
+    host="localhost",
+    token="",
+    headers={},
+    timeout=1,
+    stream=False,
+    verify=False,
+)
+
+
+def test_create_scicat_dataset(require_scicat_backend: bool):
+    assert require_scicat_backend
+    dummy_dataset = ScicatDataset(
+        pid='abc',
+        size=0,
+        numberOfFiles=0,
+        isPublished=False,
+        datasetName='datasetName',
+        description='description',
+        principalInvestigator='principalInvestigator',
+        creationLocation="here",
+        scientificMetadata={},
+        owner="me",
+        ownerEmail="",
+        sourceFolder="",
+        contactEmail="",
+        creationTime="now",
+        sampleId="",
+    )
+    create_scicat_dataset(
+        dataset=scicat_dataset_to_dict(dummy_dataset),
+        config=SAMPLE_OPTION,
+        logger=logging.getLogger(__name__),
+    )