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@SioStef
SioStef authored Apr 2, 2022
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A small R script for generating pangenome accumulation curves


This R script will compute three type of pangenome-related accumulation curves (gene cluster accumulation, core genome and accumulation unique gene clusters) for a number of randomly sampled genomes based on a user defined number of permutations.
This R script will compute three type of pangenome-related accumulation curves (gene cluster accumulation, core genome and accumulation unique gene clusters) for a number of randomly sampled genomes based on a user defined number of permutations. The output is a table summerizing the permutation results using "matrixStats" R package (https://github.com/HenrikBengtsson/matrixStats).

**Usage**
source(“panplots.R”)
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