removed multithreading for vcf concat

WGLab · May 9, 2023 · d31ceb4 · d31ceb4
1 parent 8285591
commit d31ceb4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/nanocaller_src/indelCaller.py b/nanocaller_src/indelCaller.py
@@ -321,7 +321,7 @@ def call_manager(params):
         final_vcf=os.path.join(params['vcf_path'],'%s.vcf.gz' %params['prefix'])
         output_files['final']=final_vcf
 
-        run_cmd('bcftools concat --threads %d %s %s -a | bgziptabix %s' %(params['cpu'], output_files['snps'], output_files['indels'], output_files['final']), error=True)
+        run_cmd('bcftools concat %s %s -a | bgziptabix %s' %(output_files['snps'], output_files['indels'], output_files['final']), error=True)
 
 
     return output_files