The code was written to process the output file from MiXCR (Dmitriy A. Bolotin, Stanislav Poslavsky, Igor Mitrophanov, Mikhail Shugay, Ilgar Z. Mamedov, Ekaterina V. Putintseva, and Dmitriy M. Chudakov. "MiXCR: software for comprehensive adaptive immunity profiling." Nature methods 12, no. 5 (2015): 380-381.)
The code examines the number of mismatches of the V/J/C genes after the aligning the samples to the MiXCR's database.
If you have any questions, feel free to contact Yu-Ning Huang ([email protected]) at the PhD in Clinical and Experimental Therapeutics, Alfred E. Mann School of Pharmacy, University of Southern California.