Refactor neighbors-based metrics to use NeighborsResults
#129
Codecov / codecov/project
succeeded
Jan 4, 2024 in 0s
91.00% (target 1.00%)
View this Pull Request on Codecov
91.00% (target 1.00%)
Details
Codecov Report
Attention: 6 lines in your changes are missing coverage. Please review.
Comparison is base (
9bd6efb) 93.77% compared to head (a22c3e7) 91.00%.
Additional details and impacted files
@@ Coverage Diff @@
## main #129 +/- ##
==========================================
- Coverage 93.77% 91.00% -2.77%
==========================================
Files 25 25
Lines 931 956 +25
==========================================
- Hits 873 870 -3
- Misses 58 86 +28 | Files | Coverage Δ | |
|---|---|---|
| src/scib_metrics/_graph_connectivity.py | 100.00% <100.00%> (ø) |
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| src/scib_metrics/_lisi.py | 100.00% <100.00%> (ø) |
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| src/scib_metrics/benchmark/_core.py | 98.60% <100.00%> (-0.03%) |
⬇️ |
| src/scib_metrics/nearest_neighbors/__init__.py | 100.00% <100.00%> (ø) |
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| src/scib_metrics/nearest_neighbors/_jax.py | 100.00% <100.00%> (ø) |
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| src/scib_metrics/nearest_neighbors/_pynndescent.py | 100.00% <100.00%> (ø) |
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| src/scib_metrics/utils/_diffusion_nn.py | 80.76% <100.00%> (-11.69%) |
⬇️ |
| src/scib_metrics/utils/_lisi.py | 100.00% <100.00%> (ø) |
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| src/scib_metrics/utils/_pcr.py | 92.59% <100.00%> (-0.75%) |
⬇️ |
| src/scib_metrics/_nmi_ari.py | 93.87% <88.88%> (+0.12%) |
⬆️ |
| ... and 2 more |
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