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Merge pull request #82 from chaitjo/main
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Minor fix: update ICLR paper citation and add link
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amorehead authored Mar 7, 2024
2 parents 186beca + c669641 commit d1e7d46
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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### Features
* Fix `sequence_edges` behaviour when argument `b` is a `Data` object [#80](https://github.com/a-r-j/ProteinWorkshop/pull/80)

### Misc
* Update ICLR paper link and citation [#82](https://github.com/a-r-j/ProteinWorkshop/pull/82)

### 0.2.5 (28/12/2023)

#### Datasets
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5 changes: 3 additions & 2 deletions README.md
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[Documentation](https://www.proteins.sh)

This [repository](https://github.com/a-r-j/ProteinWorkshop) provides the code for the protein structure representation learning benchmark detailed in the paper *Evaluating Representation Learning on the Protein Structure Universe* (ICLR 2024).

This [repository](https://github.com/a-r-j/ProteinWorkshop) provides the code for the protein structure representation learning benchmark detailed in the paper [*Evaluating Representation Learning on the Protein Structure Universe*](https://openreview.net/forum?id=sTYuRVrdK3) (ICLR 2024).

In the benchmark, we implement numerous [featurisation](https://www.proteins.sh/configs/features) schemes, [datasets](https://www.proteins.sh/configs/dataset) for [self-supervised pre-training](https://proteins.sh/quickstart_component/pretrain.html) and [downstream evaluation](https://proteins.sh/quickstart_component/downstream.html), [pre-training](https://proteins.sh/configs/task) tasks, and [auxiliary tasks](https://proteins.sh/configs/task.html#auxiliary-tasks).

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@inproceedings{
jamasb2024evaluating,
title={Evaluating Representation Learning on the Protein Structure Universe},
author={Arian R. Jamasb, Alex Morehead, Zuobai Zhang, Chaitanya K. Joshi, Kieran Didi, Simon V. Mathis, Charles Harris, Jian Tang, Jianlin Cheng, Pietro Lio, Tom L. Blundell},
author={Arian R. Jamasb, Alex Morehead, Chaitanya K. Joshi, Zuobai Zhang, Kieran Didi, Simon V. Mathis, Charles Harris, Jian Tang, Jianlin Cheng, Pietro Lio, Tom L. Blundell},
booktitle={The Twelfth International Conference on Learning Representations},
year={2024},
}
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2 changes: 1 addition & 1 deletion citation.bib
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@inproceedings{
jamasb2024evaluating,
title={Evaluating Representation Learning on the Protein Structure Universe},
author={Arian R. Jamasb, Alex Morehead, Zuobai Zhang, Chaitanya K. Joshi, Kieran Didi, Simon V. Mathis, Charles Harris, Jian Tang, Jianlin Cheng, Pietro Lio, Tom L. Blundell},
author={Arian R. Jamasb, Alex Morehead, Chaitanya K. Joshi, Zuobai Zhang, Kieran Didi, Simon V. Mathis, Charles Harris, Jian Tang, Jianlin Cheng, Pietro Lio, Tom L. Blundell},
booktitle={The Twelfth International Conference on Learning Representations},
year={2024},
}

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