cohort360-main-pipeline

feat(opensource): add feature flags for basic opensource stack compat… #2780

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Triggered via push December 5, 2024 15:26

pl-buiquang

pushed 5b0980d

oss_adaptations

Status Failure

Total duration 1m 57s

Artifacts –

main.yml

on: push

test

1m 47s

publish

Annotations

10 errors and 11 warnings

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildEncounterFilter > should return complete build Encounter: src/__tests__/cohortCreation/cohortCreation.test.ts#L266

AssertionError: expected [ 'subject.active=true', …(17) ] to deeply equal [ 'subject.active=true', …(17) ] - Expected + Received Array [ "subject.active=true", "reason-code=mode1,mode2", "admission-mode=entry1,entry2", "discharge-disposition-mode=exit1,exit2", "class=prise1,prise2", "stay=sejour1,sejour2", "discharge-disposition=destination1,destination2", "admit-source=provenance1,provenance2", "admission-type=admission1,admission2", "admission-destination-type=reason1,reason2", - "encounter-care-site=8312002244", + "service-provider=8312002244", "status=status1,status2", "length=ge1616", "length=le1616", "start-age-visit=ge428", "start-age-visit=le428", "_filter=(period-start ge 2024-09-05T00:00:00Z and period-start le 2024-09-05T00:00:00Z) or not (period-start eq \"*\")", "_filter=(period-end ge 2024-09-06T00:00:00Z and period-end le 2024-09-07T00:00:00Z) or not (period-end eq \"*\")", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:266:59

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildDocumentFilter > should return default documentCriteria: src/__tests__/cohortCreation/cohortCreation.test.ts#L274

AssertionError: expected [ 'subject.active=true', …(10) ] to deeply equal [ …(10) ] - Expected + Received Array [ - "type:not=doc-impor&contenttype=text/plain&subject.active=true", + "subject.active=true", + "type:not=doc-impor&contenttype=text/plain", "", "", "", "", "", "", "", "", "", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:274:51

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildDocumentFilter > should return complete documentCriteria: src/__tests__/cohortCreation/cohortCreation.test.ts#L290

AssertionError: expected [ 'subject.active=true', …(10) ] to deeply equal [ …(10) ] - Expected + Received Array [ - "type:not=doc-impor&contenttype=text/plain&subject.active=true", - "encounter.encounter-care-site=8312016825", + "subject.active=true", + "type:not=doc-impor&contenttype=text/plain", + "encounter.service-provider=8312016825", "_text=cancer", "docstatus=http://hl7.org/fhir/CodeSystem/composition-status|final,http://hl7.org/fhir/CodeSystem/composition-status|preliminary", "type=crh-j,crh-chir", "encounter.status=cancelled", "date=ge2024-09-02T00:00:00Z", "date=le2024-09-04T00:00:00Z", "_filter=(encounter.period-start ge 2024-09-05T00:00:00Z and encounter.period-start le 2024-09-05T00:00:00Z) or not (encounter.period-start eq \"*\")", "_filter=(encounter.period-end ge 2024-09-06T00:00:00Z and encounter.period-end le 2024-09-07T00:00:00Z) or not (encounter.period-end eq \"*\")", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:290:51

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildConditionFilter > should return complete conditionCriteria: src/__tests__/cohortCreation/cohortCreation.test.ts#L314

AssertionError: expected [ 'subject.active=true', …(9) ] to deeply equal [ 'subject.active=true', …(9) ] - Expected + Received Array [ "subject.active=true", "code=I841,I842", "orbis-status=fp,f", "_source=AREM", - "encounter.encounter-care-site=8312016825", + "encounter.service-provider=8312016825", "encounter.status=finished", "", "", "_filter=(encounter.period-start ge 2024-09-05T00:00:00Z and encounter.period-start le 2024-09-05T00:00:00Z) or not (encounter.period-start eq \"*\")", "encounter.period-end=ge2024-09-06T00:00:00Z&encounter.period-end=le2024-09-07T00:00:00Z", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:314:52

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildProcedureFilter > should return complete procedureCriteria : src/__tests__/cohortCreation/cohortCreation.test.ts#L337

AssertionError: expected [ 'subject.active=true', …(8) ] to deeply equal [ 'subject.active=true', …(8) ] - Expected + Received Array [ "subject.active=true", "code=000126,000127", - "encounter.encounter-care-site=8312016825", + "encounter.service-provider=8312016825", "encounter.status=entered-in-error", "date=ge2024-09-06T00:00:00Z", "date=le2024-09-06T00:00:00Z", "_source=ORBIS", "encounter.period-start=ge2024-09-05T00:00:00Z&encounter.period-start=le2024-09-05T00:00:00Z", "_filter=(encounter.period-end ge 2024-09-06T00:00:00Z and encounter.period-end le 2024-09-07T00:00:00Z) or not (encounter.period-end eq \"*\")", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:337:52

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildClaimFilter > should return complete claimCriteria: src/__tests__/cohortCreation/cohortCreation.test.ts#L359

AssertionError: expected [ 'patient.active=true', …(7) ] to deeply equal [ 'patient.active=true', …(7) ] - Expected + Received Array [ "patient.active=true", "diagnosis=05C021,05C022,05C023,05C024", - "encounter.encounter-care-site=8312016825", + "encounter.service-provider=8312016825", "encounter.status=cancelled", "created=ge2024-09-03T00:00:00Z", "created=le2024-09-04T00:00:00Z", "_filter=(encounter.period-start ge 2024-09-04T00:00:00Z and encounter.period-start le 2024-09-07T00:00:00Z) or not (encounter.period-start eq \"*\")", "encounter.period-end=ge2024-09-02T00:00:00Z&encounter.period-end=le2024-09-06T00:00:00Z", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:359:48

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildMedicationFilter > should return complete Medication administation criteria: src/__tests__/cohortCreation/cohortCreation.test.ts#L385

AssertionError: expected [ 'subject.active=true', …(11) ] to deeply equal [ 'subject.active=true', …(11) ] - Expected + Received Array [ "subject.active=true", "dosage-route=CUTAN", - "context.encounter-care-site=8312016825", + "context.service-provider=8312016825", "code=https://terminology.eds.aphp.fr/atc|D01AA01,https://terminology.eds.aphp.fr/atc|D01AA02,https://terminology.eds.aphp.fr/smt-medicament-ucd|3400890000055", "context.status=cancelled", "effective-time=ge2024-09-03T00:00:00Z", "effective-time=le2024-09-04T00:00:00Z", "", "", "", "_filter=(context.period-start ge 2024-09-04T00:00:00Z and context.period-start le 2024-09-07T00:00:00Z) or not (context.period-start eq \"*\")", "context.period-end=ge2024-09-02T00:00:00Z&context.period-end=le2024-09-06T00:00:00Z", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:385:53

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildMedicationFilter > should return default Medication administation criteria: src/__tests__/cohortCreation/cohortCreation.test.ts#L403

AssertionError: expected [ 'subject.active=true', '', …(10) ] to deeply equal [ 'subject.active=true', '', …(10) ] - Expected + Received Array [ "subject.active=true", "", - "encounter.encounter-care-site=8312016825", + "encounter.service-provider=8312016825", "code=https://terminology.eds.aphp.fr/atc|D01AA01,https://terminology.eds.aphp.fr/atc|D01AA02,https://terminology.eds.aphp.fr/smt-medicament-ucd|3400890000055", "encounter.status=cancelled", "validity-period-start=ge2024-09-03T00:00:00Z", "validity-period-start=le2024-09-04T00:00:00Z", "", "", "category=172641", "_filter=(encounter.period-start ge 2024-09-04T00:00:00Z and encounter.period-start le 2024-09-07T00:00:00Z) or not (encounter.period-start eq \"*\")", "encounter.period-end=ge2024-09-02T00:00:00Z&encounter.period-end=le2024-09-06T00:00:00Z", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:403:53

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildObservationFilter > should return build default observation criteria: src/__tests__/cohortCreation/cohortCreation.test.ts#L411

AssertionError: expected [ 'subject.active=true', …(9) ] to deeply equal [ …(9) ] - Expected + Received Array [ - "subject.active=true&status=Val", + "subject.active=true", + "status=Val", "", "", "", "", "", "value-quantity=le0,ge0", "", "", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:411:54

src/__tests__/cohortCreation/cohortCreation.test.ts > test of buildObservationFilter > should return build complete obervation criteria: src/__tests__/cohortCreation/cohortCreation.test.ts#L426

AssertionError: expected [ 'subject.active=true', …(9) ] to deeply equal [ …(9) ] - Expected + Received Array [ - "subject.active=true&status=Val", + "subject.active=true", + "status=Val", "code=I3356", - "encounter.encounter-care-site=8312016825", + "encounter.service-provider=8312016825", "encounter.status=cancelled", "date=ge2024-09-03T00:00:00Z", "date=le2024-09-04T00:00:00Z", "value-quantity=3", "_filter=(encounter.period-start ge 2024-09-04T00:00:00Z and encounter.period-start le 2024-09-07T00:00:00Z) or not (encounter.period-start eq \"*\")", "encounter.period-end=ge2024-09-02T00:00:00Z&encounter.period-end=le2024-09-06T00:00:00Z", ] ❯ src/__tests__/cohortCreation/cohortCreation.test.ts:426:54

test

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

test: src/components/CreationCohort/ControlPanel/ControlPanel.tsx#L103

'uuid' is assigned a value but never used

test: src/components/CreationCohort/DiagramView/DiagramView.tsx#L51

React Hook useEffect has a missing dependency: 'dispatch'. Either include it or remove the dependency array

test: src/components/CreationCohort/DiagramView/components/LogicalOperator/components/CriteriaRightPanel/BiologyForm/components/BiologySearch/BiologySearch.tsx#L91