SMORE'D will no produce useful error messages when vsearch dies\nupda…

…te docs for --vthreads: vsearch threads\nbump version to 1.0rc3
appliedbinf · Feb 5, 2020 · 1351ad1 · 1351ad1
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diff --git a/README.md b/README.md
@@ -113,6 +113,8 @@ DB prefix(optional) : holds the information for DB files to be created and their
  Generate pre-sampel reports in Excel format. If an output path is given, per-sample reports will be deposited in teh same folder.
 `-t`
  Integer number of thread to use to process samples.
+`--vthreads`
+ Integer number of threads for VSEARCH to use
 `-v`  
   Prints the version of the software.  
 `-x,--overwrite`  

diff --git a/urdohelper.py b/urdohelper.py
@@ -372,6 +372,8 @@ def make_report(report_data, read_count, output_filename, template_fp, tax_dict)
   A FASTQ file is generated in the specified directory for each sample containing reads wwith no kmer matches (Unclassified reads).
 -t
   Integer number of threads to use to process samples
+--vthreads
+  Integer number of threads for VSEARCH to use
 -v
   Prints the version of the software.
 -x,--overwrite