Merge pull request #44 from mcflugen/mcflugen/update-supported-pythons

Update repository for newer Pythons, packaging standards

.github/workflows/test.yml

@@ -0,0 +1,44 @@
+name: Test
+
+on: [push, pull_request]
+
+jobs:
+  build-and-test:
+    name: Run the tests
+    # We want to run on external PRs, but not on our own internal PRs as they'll be run
+    # by the push to the branch. Without this if check, checks are duplicated since
+    # internal PRs match both the push and pull_request events.
+    if:
+      github.event_name == 'push' || github.event.pull_request.head.repo.full_name !=
+      github.repository
+
+    runs-on: ${{ matrix.os }}
+
+    defaults:
+      run:
+        shell: bash -l {0}
+
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ["3.10", "3.11", "3.12"]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: conda-incubator/setup-miniconda@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+          miniforge-variant: Miniforge3
+          miniforge-version: latest
+          auto-update-conda: true
+
+      - name: Show conda installation info
+        run: |
+          conda info
+          conda list
+
+      - name: Test
+        run: |
+          pip install nox
+          nox -s test --force-pythons="${{ matrix.python-version }}"

.gitignore

@@ -35,6 +35,7 @@ pip-delete-this-directory.txt
 
 # Unit test / coverage reports
 htmlcov/
+.nox/
 .tox/
 .coverage
 .cache

.pre-commit-config.yaml

@@ -0,0 +1,79 @@
+repos:
+- repo: https://github.com/psf/black
+  rev: 23.11.0
+  hooks:
+  - id: black
+    name: black
+    description: "Black: The uncompromising Python code formatter"
+    entry: black
+    language: python
+    language_version: python3
+    minimum_pre_commit_version: 2.9.2
+    require_serial: true
+    types_or: [python, pyi]
+
+- repo: https://github.com/pycqa/flake8
+  rev: 6.1.0
+  hooks:
+  - id: flake8
+    # args: [--select=B028]
+    args: [
+      # --select=B028,
+      "--extend-ignore=E722,B001"
+    ]
+    additional_dependencies:
+    - flake8-bugbear
+    - flake8-comprehensions
+    - flake8-simplify
+
+- repo: https://github.com/asottile/pyupgrade
+  rev: v3.15.0
+  hooks:
+  - id: pyupgrade
+    args: [--py310-plus]
+
+- repo: https://github.com/PyCQA/isort
+  rev: 5.12.0
+  hooks:
+  - id: isort
+    files: \.py$
+
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v4.5.0
+  hooks:
+    - id: check-builtin-literals
+    - id: check-added-large-files
+    - id: check-case-conflict
+    - id: check-toml
+    - id: check-yaml
+      exclude: |
+          (?x)^(
+              conda/meta.yaml
+          )
+    - id: debug-statements
+    - id: end-of-file-fixer
+    - id: forbid-new-submodules
+    - id: mixed-line-ending
+    - id: trailing-whitespace
+
+- repo: https://github.com/regebro/pyroma
+  rev: "4.2"
+  hooks:
+  - id: pyroma
+    args: ["-d", "--min=10", "."]
+
+# - repo: https://github.com/mgedmin/check-manifest
+#   rev: "0.49"
+#   hooks:
+#   - id: check-manifest
+#     args: ["--ignore=.nox,build", "--no-build-isolation"]
+
+# - repo: https://github.com/PyCQA/pydocstyle
+#   rev: 6.3.0
+#   hooks:
+#   - id: pydocstyle
+#     files: landlab/.*\.py$
+#     args:
+#     - --convention=numpy
+#     - --add-select=D417
+#     additional_dependencies: [".[toml]"]

AUTHORS.md

@@ -0,0 +1,9 @@
+# Credits
+
+## Development Lead
+
+* [Andrew D. Wickert](https://github.com/awickert)
+
+## Contributors
+
+None yet. Why not be the first?

CHANGES.md

@@ -0,0 +1,63 @@
+# Release Notes
+
+## [1.1.1](https://github.com/awickert/gFlex/releases/tag/v1.1.1) - 2021-06-26
+
+- Updated PyPI support: twine upload, README.md
+- Throw meaningful error if a nonuniform self.Te grid is used with the
+  analytical solution
+
+## [1.1.0](https://github.com/awickert/gFlex/releases/tag/v1.1.0) - 2018-05-28
+
+- Support for both Python 2 and Python 3
+- Main code
+- Examples
+- README.md updates
+- PATH updates in
+- Code tests included
+- Code testing on commit by Travis
+- Updated on PyPI
+
+## [1.0.1](https://github.com/awickert/gFlex/releases/tag/v1.0.1) - 2018-05-25
+
+- Final Python 2 (only) release
+- Additional documentation added
+
+## [1.0.0](https://github.com/awickert/gFlex/releases/tag/v1.0.0) - 2017-05-10
+
+This is the update is what is available now from pypi.
+
+- Minor updates to the main gFlex codes
+- Addition of a missing "12" in the flexural wavelength calculator in the utilities.
+
+
+## [1.0](https://github.com/awickert/gFlex/releases/tag/v1.0) - 2016-01-28
+
+- First full release of gFlex in association with the now-accepted GMD paper,
+"Open-source modular solutions for flexural isostasy: gFlex v1.0", by A. D. Wickert.
+
+
+## [0.9](https://github.com/awickert/gFlex/releases/tag/v0.9) - 2015-03-05
+
+- Release submitted to GMD and that appears on PyPI; this is the same as v1.0a
+  on umn-earth-surface.
+
+## [0.8.1](https://github.com/awickert/gFlex/releases/tag/v0.8.1) - 2015-03-04
+
+- Fixed error in PyPI integration from v0.8 and updated README.md to include
+  PyPI integration.
+
+
+## [0.8](https://github.com/awickert/gFlex/releases/tag/v0.8) - 2015-03-04
+
+- First fully-functional and error-checked release, and therefore the first
+  true non-"pre-release".
+
+
+## [0.7](https://github.com/awickert/gFlex/releases/tag/0.7) - 2015-01-21
+
+This release may be short-lived, but is the turning point at which work
+on gFlex will go from fixing deficiencies to adding new capabilities.
+As such, it is receiving version 0.7 (the last version of its parent project,
+"Flexure", was 0.6 back in 2012). It now seems to be functional and stable,
+and thus this tagged release will be the basis for this stage of the model
+to be pulled to @csdms-contrib and @umn-earth-surface.

MANIFEST.in

@@ -0,0 +1,19 @@
+include AUTHORS.md
+include CHANGES.md
+include LICENSE.md
+include README.md
+include CITATION.cff
+include requirements*
+include noxfile.py
+
+recursive-include gflex
+recursive-include tests *py
+
+exclude .pre-commit-config.yaml
+exclude gflex_bmi.py
+exclude topypi-test.sh
+exclude topypi.sh
+
+recursive-exclude conda *
+recursive-exclude input *
+recursive-exclude utilities *