minor fixes

bhardwaj-lab · May 7, 2024 · 64393e7 · 64393e7
1 parent 92f0098
commit 64393e7
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/sincei/_deprecated.py b/sincei/_deprecated.py
@@ -135,6 +135,7 @@ def cluster_LSA(
         Graph object.
     """
     import community
+
     # cluster on cel-topic dist
     _distances = pairwise_distances(cell_topic.iloc[:, 1:], metric=distance_metric)
     knn_indices, knn_distances = _get_indices_distances_from_dense_matrix(_distances, nk)

diff --git a/sincei/scCountReads.py b/sincei/scCountReads.py
@@ -200,11 +200,11 @@ def main(args=None):
 
     num_reads_per_bin, regionList = c.run(allArgs=args)
 
-    sys.stderr.write("Number of bins " "found: {}\n".format(num_reads_per_bin.shape[0]))
+    sys.stderr.write("Number of bins/features " "found: {}\n".format(num_reads_per_bin.shape[0]))
 
     if num_reads_per_bin.shape[0] < 1:
         exit(
-            "ERROR: too few non zero bins found.\n"
+            "ERROR: too few non zero bins/features found.\n"
             "If using --region please check that this "
             "region is covered by reads.\n"
         )