Merge pull request #1476 from deepakunni3/update-readme

Update links and autogenerated artifacts in README.md

README.md

@@ -1,21 +1,22 @@
-[![](https://img.shields.io/github/license/biolink/biolink-model)](https://img.shields.io/github/license/biolink/biolink-model)
 [![Biolink Model](https://img.shields.io/github/v/release/biolink/biolink-model?style=flat-square)](https://img.shields.io/github/v/release/biolink/biolink-model?style=flat-square)
-[![Python 3.10.1](https://upload.wikimedia.org/wikipedia/commons/f/fc/Blue_Python_3.7_Shield_Badge.svg)](https://www.python.org/downloads/release/python-370/)
+[![Python 3.9](https://img.shields.io/badge/python-3.9+-blue)](https://img.shields.io/badge/python-3.9+-blue)
 [![DOI](https://zenodo.org/badge/112995625.svg)](https://zenodo.org/badge/latestdoi/112995625)
 
 
-<img src="images/biolink-logo.png" width="20%">
+<img src="src/docs/images/biolink-logo.png" width="20%">
 
-# Biolink Model: https://w3id.org/biolink/biolink-model.yaml
+# Biolink Model
+
+**Biolink Model:** https://w3id.org/biolink/biolink-model.yaml
 
 Quickstart docs:
 
 For a good overview of the biolink-model, [watch Chris Mungall's talk](https://www.youtube.com/watch?v=RE1hFm8lvJA&t=2s) at ICBO 2020.
 
 - Browse the model: [https://biolink.github.io/biolink-model](https://biolink.github.io/biolink-model)
-  - [named thing](https://biolink.github.io/biolink-model/docs/NamedThing.html)
-  - [association](https://biolink.github.io/biolink-model/docs/Association.html)
-  - [predicate](https://biolink.github.io/biolink-model/docs/predicates.html)
+  - [named thing](https://biolink.github.io/biolink-model/NamedThing/)
+  - [association](https://biolink.github.io/biolink-model/Association/)
+  - [predicate](https://biolink.github.io/biolink-model/related_to/)
 
 
 Refer to the following resources for a quick introduction to the Biolink Model:
@@ -24,7 +25,7 @@ Refer to the following resources for a quick introduction to the Biolink Model:
     - Slides: https://bit.ly/biolink-model-workshop-biocuration-2020
     - Video: https://www.youtube.com/watch?v=RE1hFm8lvJA
 
-See also [Biolink Model Guidelines](guidelines/README.md) for help understanding, curating, and working with the model.
+See also the Biolink Model Documentation for help in [understanding](https://biolink.github.io/biolink-model/), [curating](https://biolink.github.io/biolink-model/curating-the-model/), and [working](https://biolink.github.io/biolink-model/working-with-the-model/) with the model.
 
 
 ## Introduction
@@ -47,7 +48,7 @@ The model itself is being used in the following projects:
 - [Monarch Initiative](https://monarchinitiative.org/)
 - [KG-COVID-19](https://github.com/Knowledge-Graph-Hub/kg-covid-19/wiki)
 - [KG Microbe](https://github.com/Knowledge-Graph-Hub/kg-microbe)
-- [Illuminating the Druggable Genome]()
+- [Illuminating the Druggable Genome](https://github.com/Knowledge-Graph-Hub/kg-idg)
 
 
 ## Organization
@@ -58,19 +59,14 @@ be relatively simple to view and edit in its native form.
 The yaml definition is currently used to derive:
 
   - [JSON Schema](https://github.com/biolink/biolink-model/blob/master/project/jsonschema/biolink_model.schema.json)
-  - [Python dataclasses](biolink/model.py)
-  - [Java code gen](java)
+  - [Python dataclasses](https://github.com/biolink/biolink-model/blob/master/src/biolink_model/datamodel/model.py)
   - [ProtoBuf definitions](https://github.com/biolink/biolink-model/blob/master/project/protobuf/biolink_model.proto)
   - [GraphQL](https://github.com/biolink/biolink-model/blob/master/project/graphql/biolink_model.graphql)
-  - [RDF](biolink-model.ttl)
   - [OWL](https://github.com/biolink/biolink-model/blob/master/project/owl/biolink_model.owl.ttl)
   - [RDF Shape Expressions](https://github.com/biolink/biolink-model/blob/master/project/shex/biolink_model.shex)
   - [JSON-LD context](https://github.com/biolink/biolink-model/blob/master/project/jsonld/biolink_model.context.jsonld)
-  - [Graphviz](graphviz)
-  - [GOlr YAML schemas](golr-views)
-    - these can be compiled down to Solr XML schemas
-    - these are also intermediate targets used within the BBOP/AmiGO framework
-  - [Markdown documentation](docs)
+  - [SHACL Shapes](https://github.com/biolink/biolink-model/blob/master/project/shacl/biolink_model.shacl.ttl)
+  - [ShEx Shapes](https://github.com/biolink/biolink-model/blob/master/project/shex/biolink_model.shex)
 
 
 ## Citing Biolink Model