Test bisulfite seq

multiqc report

data tested:

bisulfite_human_1|human|/srv/data/sargasso/data/bisulfite_data/human/pe|_1.fastq.gz|_2.fastq.gz|SRR5467502'
bisulfite_human_2|human|/srv/data/sargasso/data/bisulfite_data/human/se|.fastq.gz||ERR2617091'
bisulfite_mouse_3|mouse|/srv/data/sargasso/data/bisulfite_data/mouse/pe|_1.fastq.gz|_2.fastq.gz|SRR7419583,SRR7419599'
bisulfite_rat_4|rat|/srv/data/sargasso/data/bisulfite_data/rat/pe|_1.fastq.gz|_2.fastq.gz|SRR5442848'

Apart from the bisulfite_human_2, which is a single-end human sample, all the other samples have similar results.

• 60% + for conservative
• 90% + for best and others

The rat samples are a little worse than the others, in turn of correctly assigned reads. Only 32% in conservative, 90% for others.