Initial commit

.Rbuildignore

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+# docs and unit tests
+^\.github$
+^_pkgdown\.yml$
+^pkgdown$
+^docs$
+^analysis$
+^manuscript$
+^data-raw$
+^vignettes_add$
+
+# R-markdown files in the root folder.
+^LICENSE.*$
+^CONDUCT\.md$
+^NEWS\.md$
+^README\.md$
+^contact\.md$
+^cran-comments\.md$
+^review-notes\.md$
+
+# R Stuff
+^.*\.Rproj$
+^.*\.Renviron$
+^\.Rproj\.user$
+^\.httr-oauth$
+^.*-logo\..*$
+^codemeta\.json$

.github/workflows/deploy_docs.yaml

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+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
+
+name: pkgdown
+
+# set write permissions
+# to create gh-pages
+permissions:
+  contents: write
+
+jobs:
+  pkgdown:
+    runs-on: Ubuntu-latest
+    timeout-minutes: 20
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v3
+      - uses: r-lib/actions/setup-pandoc@v2
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          cache: false
+          extra-packages: any::pkgdown, any::devtools, local::.
+          needs: website
+
+      - name: Build site
+        run: devtools::install_github("khufkens/bgtemplate"); pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

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+# History files
+.Rhistory
+.Rapp.history
+
+# Session Data files
+.RData
+
+# User-specific files
+.Ruserdata
+
+# Example code in package build process
+*-Ex.R
+
+# Output files from R CMD build
+/*.tar.gz
+
+# Output files from R CMD check
+/*.Rcheck/
+
+# RStudio files
+.Rproj.user/
+
+# produced vignettes
+vignettes/*.html
+vignettes/*.pdf
+
+# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
+.httr-oauth
+
+# knitr and R markdown default cache directories
+*_cache/
+/cache/
+
+# Temporary files created by R markdown
+*.utf8.md
+*.knit.md
+
+# R Environment Variables
+.Renviron

DESCRIPTION

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+Package: RTemplate
+Title: Your project
+Version: 0.1
+Authors@R: 
+    person(
+      given = "X",
+      family = "Y",
+      email = "[email protected]",
+      role = c("aut", "cre"),
+      comment = c(ORCID = "0000-0000-0000-0000")
+    )
+Description: What the package does (one paragraph).
+License: AGPL-3
+Encoding: UTF-8
+Roxygen: list(markdown = TRUE)
+RoxygenNote: 7.2.3

Dockerfile_torch

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+FROM rocker/cuda:4.3.1
+
+LABEL org.opencontainers.image.licenses="GPL-2.0-or-later" \
+      org.opencontainers.image.source="https://github.com/rocker-org/rocker-versioned2" \
+      org.opencontainers.image.vendor="Rocker Project" \
+      org.opencontainers.image.authors="Carl Boettiger <[email protected]>"
+
+ENV S6_VERSION=v2.1.0.2
+ENV RSTUDIO_VERSION=2023.09.0+463
+ENV DEFAULT_USER=rstudio
+ENV PANDOC_VERSION=default
+ENV QUARTO_VERSION=default
+
+RUN /rocker_scripts/install_rstudio.sh
+RUN /rocker_scripts/install_pandoc.sh
+RUN /rocker_scripts/install_quarto.sh
+RUN /rocker_scripts/install_tidyverse.sh
+
+RUN apt update && apt install -y libprotobuf-dev libmagick++-dev libavfilter-dev
+
+RUN R -e "install.packages( \
+      c('torch', 'luz', 'torchvision', 'torchaudio','rsample'), \
+      dependencies = TRUE, \
+      repos='http://cran.rstudio.com/')"
+RUN R -e "Sys.setenv(CUDA='11.7'); torch::install_torch(); quit('no')"
+
+EXPOSE 8787
+
+CMD ["/init"]