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1. sylph sylph Public

   ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

   Rust 329 19

2. skani skani Public

   Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale database searches.

   Rust 267 15

3. myloasm myloasm Public

   A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes from nanopore and PacBio metagenomes.

   Rust 174 8

4. savont savont Public

   Amplicon sequencing variants and taxonomic profiling from modern nanopore / HiFi long read amplicons.

   Rust 68 7