Code

Atlas packaging template#400

Code

Merged

alessandrofelder merged 38 commits intobrainglobe:mainbrainglobe/brainglobe-atlasapi:mainfrom PolarBean:atlas_packaging_templatePolarBean/brainglobe-atlasapi:atlas_packaging_templateCopy head branch name to clipboardOct 28, 2024

+284-56

Commits

Commits on Aug 28, 2024

• First version of the template script

  PolarBean

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• make example_mouse follow the new template

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Fix error in example mouse

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• mixed up reference and annotation

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• added mandatory import to template

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• remove import from example

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• added mandatory import to template

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Aug 29, 2024

• include case where variables should be passed between functions

  PolarBean

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Commits on Sep 11, 2024

• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py

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  alessandrofelder

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py

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• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/template_script.py

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  alessandrofelder

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• keep lines shorter than limit and only run code in __main__

  PolarBean

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• reformat example mouse

  PolarBean

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• use pooch to validate hash

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• add bg_root_dir global

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• fix references to annotation and reference

  PolarBean

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Commits on Sep 12, 2024

• fix error in the way structure id paths were shown in the example

  PolarBean

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• fix typo

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Commits on Sep 18, 2024

• Update brainglobe_atlasapi/atlas_generation/atlas_scripts/example_mouse.py

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  PolarBean

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• adjust comment suggestion to be compliant with the 79 character line limit

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Commits on Oct 28, 2024

• add additional reference to packaging template script

  alessandrofelder

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