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IgorTatarnikov authored Aug 15, 2024
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Stitching tiled 3D light-sheet data in napari

<p align="center">
<img height="460" src="https://github.com/user-attachments/assets/91f61f24-6fcf-4aa1-8a8f-de8c5e3db4a2" alt="Stitching a mouse brain acquired at a resolution of 4.06 &micro;m/px, 4.06 &micro;m/px, 5 &micro;m/px using 4 tiles">
</p>

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A [napari] plugin for stitching tiled 3D acquisitions from a [mesoSPIM] light-sheet microscope.
The plugin utilises [BigStitcher] to align the tiles and napari to visualise the stitched data.

## Installation

We strongly recommend to use a virtual environment manager (like `conda` or `venv`). The installation instructions below
We strongly recommend to use a virtual environment manager (like `conda`). The installation instructions below
will not specify the Qt backend for napari, and you will therefore need to install that separately. Please see the
[`napari` installation instructions](https://napari.org/stable/tutorials/fundamentals/installation.html) for further advice on this.

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