Fix Module0506 inputs for Batch and SingleSample wdls (#118)

Co-authored-by: henriqueribeiro <[email protected]>
broadinstitute · Mar 2, 2021 · 76f2e8c · 76f2e8c
1 parent 595e818
commit 76f2e8c
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diff --git a/wdl/Module0506.wdl b/wdl/Module0506.wdl
@@ -20,6 +20,7 @@ workflow Module0506 {
     Array[File] pesr_vcfs
     Array[File] depth_vcfs
     Array[File] disc_files
+    Array[File]? disc_files_index
     Array[File] bincov_files
 
     Array[File] raw_sr_bothside_pass_files
@@ -203,6 +204,7 @@ workflow Module0506 {
       cluster_bothside_pass_lists=Module0506Cluster.cluster_bothside_pass_lists,
       cluster_background_fail_lists=Module0506Cluster.cluster_background_fail_lists,
       disc_files=disc_files,
+      disc_files_index=disc_files_index,
       rf_cutoff_files=rf_cutoff_files,
       contig_list=contig_list,
       max_shards_per_chrom=max_shards_per_chrom,

diff --git a/wdl/Module0506ComplexResolve.wdl b/wdl/Module0506ComplexResolve.wdl
@@ -14,6 +14,7 @@ workflow Module0506ComplexResolve {
     Array[File] cluster_background_fail_lists
 
     Array[File] disc_files
+    Array[File]? disc_files_index
     Array[File] rf_cutoff_files
 
     File contig_list
@@ -73,6 +74,7 @@ workflow Module0506ComplexResolve {
         min_variants_per_shard=100,
         cytobands=cytobands,
         disc_files=disc_files,
+        disc_files_index=disc_files_index,
         mei_bed=mei_bed,
         pe_exclude_list=pe_exclude_list,
         rf_cutoff_files=rf_cutoff_files,
@@ -109,6 +111,7 @@ workflow Module0506ComplexResolve {
         min_variants_per_shard=100,
         cytobands=cytobands,
         disc_files=disc_files,
+        disc_files_index=disc_files_index,
         mei_bed=mei_bed,
         pe_exclude_list=pe_exclude_list,
         rf_cutoff_files=rf_cutoff_files,