updating changelogs

broadinstitute · Oct 30, 2024 · 53ac2f7 · 53ac2f7
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diff --git a/pipelines/skylab/optimus/Optimus.changelog.md b/pipelines/skylab/optimus/Optimus.changelog.md
@@ -4,6 +4,7 @@
 * Renamed the input expected_cells to gex_expected_cells
 * Updated gex_expected_cells to a required output
 * Reformatted the library CSV output filename to remove an extra gex
+* Updated the ATAC fragment file output so that it is bgzipped; this does  not impact the Optimus workflow
 
 # 7.7.0
 2024-09-24 (Date of Last Commit)

diff --git a/pipelines/skylab/paired_tag/PairedTag.changelog.md b/pipelines/skylab/paired_tag/PairedTag.changelog.md
@@ -4,6 +4,7 @@
 * Updated the workflow to include a new expected_cells input parameter describing the number of cells used as input to the library preparation; this is passed to both the ATAC workflows and Optimus workflows and the default is set to 3000 cells
 * Updated the ATAC library CSV and the Gene Expression library CSV to be consistent in file naming convention and to have similar case for metric names
 * Added a new metric to the ATAC library CSV to calculate percent_target, which is the number of estimated cells by SnapATAC2 divided by expected_cells input
+* Updated the ATAC fragment file output so that it is bgzipped
 
 # 1.7.1
 2024-10-18 (Date of Last Commit)

diff --git a/pipelines/skylab/slideseq/SlideSeq.changelog.md b/pipelines/skylab/slideseq/SlideSeq.changelog.md
@@ -2,6 +2,7 @@
 2024-10-24 (Date of Last Commit)
 
 * Updated the h5adUtils WDL to rename the gene expression library CSV filename; this does not impact slideseq
+* Updated the ATAC fragment file output so that it is bgzipped; this does not impact the slideseq workflow
 
 # 3.4.2
 2024-09-24 (Date of Last Commit)

diff --git a/...tseq2_single_nucleus_multisample/MultiSampleSmartSeq2SingleNucleus.changelog.md b/...tseq2_single_nucleus_multisample/MultiSampleSmartSeq2SingleNucleus.changelog.md
@@ -2,6 +2,7 @@
 2024-10-23 (Date of Last Commit)
 
 * Updated the h5adUtils WDL to rename the gene expression library CSV filename; this does not impact slideseq
+* Updated the ATAC fragment file output so that it is bgzipped; this does not impact the Multi-snSS2 workflow
 
 # 2.0.1
 2024-09-24 (Date of Last Commit)