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testing pr - Np jw test illumina genotyping arrays #1429

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testing pr - Np jw test illumina genotyping arrays #1429

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c36501c
Add script for updating test input json files
jessicaway Oct 24, 2024
59a6b29
Merge branch 'develop' into jw_test_illumina_genotyping_arrays
jessicaway Oct 24, 2024
c620aee
Update json formatting script
jessicaway Oct 29, 2024
cb43d52
Merge branch 'develop' into jw_test_illumina_genotyping_arrays
jessicaway Oct 29, 2024
23f7f83
Update json formatting script
jessicaway Nov 13, 2024
8f2db70
Merge branch 'develop' into jw_test_illumina_genotyping_arrays
jessicaway Nov 13, 2024
f9e373e
More updates - still untested
jessicaway Nov 14, 2024
cc0f636
More updates - still untested
jessicaway Nov 14, 2024
32a0fc6
testing
nikellepetrillo Nov 15, 2024
0c82ed0
convert UPDATE_TRUTH to bool friendly format
nikellepetrillo Nov 15, 2024
ce9be07
hard code update truth to false for now
nikellepetrillo Nov 15, 2024
5f3a465
hard code update truth to false for now
nikellepetrillo Nov 15, 2024
f34e163
spacing?
nikellepetrillo Nov 15, 2024
05e2ccb
no more hard coding
nikellepetrillo Nov 15, 2024
dff5fb4
no more hard coding
nikellepetrillo Nov 15, 2024
91270db
handle UPDATE_TRUTH
nikellepetrillo Nov 15, 2024
36f41cb
handle UPDATE_TRUTH
nikellepetrillo Nov 15, 2024
817704c
handle UPDATE_TRUTH
nikellepetrillo Nov 15, 2024
b27c130
debugging
nikellepetrillo Nov 15, 2024
e107dc7
debugging
nikellepetrillo Nov 15, 2024
5c5993a
spacing?
nikellepetrillo Nov 15, 2024
14994f8
spacing?
nikellepetrillo Nov 15, 2024
bf3b6b1
movign into loop
nikellepetrillo Nov 15, 2024
e745d51
debugging prints
nikellepetrillo Nov 15, 2024
52b8c45
space
nikellepetrillo Nov 15, 2024
de2edb7
what is the test input file?????
nikellepetrillo Nov 15, 2024
6340b02
fix name of test input file
nikellepetrillo Nov 15, 2024
01b07a0
remove print bc we arent capturing the right thing
nikellepetrillo Nov 15, 2024
a8801eb
remove print bc we arent capturing the right thing
nikellepetrillo Nov 15, 2024
0ba99a3
check to see if we are even getting the config
nikellepetrillo Nov 15, 2024
528b88f
check to see if we are even getting the config
nikellepetrillo Nov 15, 2024
6b25baf
print response
nikellepetrillo Nov 15, 2024
91c78ab
revert print response
nikellepetrillo Nov 15, 2024
6abd1d2
print the url
nikellepetrillo Nov 15, 2024
cf24731
print the url
nikellepetrillo Nov 15, 2024
9db9e21
print the url
nikellepetrillo Nov 15, 2024
fd62912
print the url
nikellepetrillo Nov 15, 2024
05975ca
use quote lib
nikellepetrillo Nov 15, 2024
51fad23
lots of debugging prints
nikellepetrillo Nov 15, 2024
e7b5f02
lots of debugging prints
nikellepetrillo Nov 15, 2024
7dbd1b3
add test to pipeline name
nikellepetrillo Nov 15, 2024
86893a0
try to quote the strings
nikellepetrillo Nov 15, 2024
b8f3a4c
try to quote the strings
nikellepetrillo Nov 15, 2024
160c4cd
remove test from url
nikellepetrillo Nov 15, 2024
584b226
change truth path and results path
nikellepetrillo Nov 15, 2024
ba85f6d
call caching
nikellepetrillo Nov 15, 2024
f6984ac
cat submission data file
nikellepetrillo Nov 15, 2024
4075f0a
cat submission data file
nikellepetrillo Nov 15, 2024
ed38434
fix call caching logic
nikellepetrillo Nov 15, 2024
180502c
retry permissions
nikellepetrillo Nov 18, 2024
3635e03
retry permissions
nikellepetrillo Nov 18, 2024
32f6fe0
add a new plumbing json
nikellepetrillo Nov 18, 2024
c3660ff
add a new plumbing json
nikellepetrillo Nov 18, 2024
2408b66
try not to overqrite
nikellepetrillo Nov 18, 2024
eeb8eb3
formatting
nikellepetrillo Nov 18, 2024
16f4a7c
mardkiown formatting
nikellepetrillo Nov 18, 2024
13c26f6
mardkiown formatting
nikellepetrillo Nov 18, 2024
53ea610
mardkiown formatting
nikellepetrillo Nov 18, 2024
dec0c7b
make submissions run in parallel
nikellepetrillo Nov 18, 2024
c15085b
clean up debugging prints
nikellepetrillo Nov 18, 2024
7bcbc98
clean up debugging prints
nikellepetrillo Nov 18, 2024
bab0a82
hyperlink?
nikellepetrillo Nov 18, 2024
19433aa
is call cache working?????
nikellepetrillo Nov 18, 2024
66ed27c
add test type
nikellepetrillo Nov 18, 2024
1f1d7e0
add test type
nikellepetrillo Nov 18, 2024
75e138a
add test type
nikellepetrillo Nov 18, 2024
4d0cbb5
add test type
nikellepetrillo Nov 18, 2024
f7be47c
add test type
nikellepetrillo Nov 18, 2024
7c4abac
add test type
nikellepetrillo Nov 18, 2024
4949be8
add test type
nikellepetrillo Nov 18, 2024
4df055a
add test type
nikellepetrillo Nov 18, 2024
bcf96da
add defaults?
nikellepetrillo Nov 18, 2024
e32de1b
remove debugging
nikellepetrillo Nov 18, 2024
c5031f1
remove debugging
nikellepetrillo Nov 19, 2024
e416a3c
fix truth path
nikellepetrillo Nov 19, 2024
3f9746d
hard code to master branch
nikellepetrillo Nov 19, 2024
7099697
set pipeline branch-specific variables
nikellepetrillo Nov 20, 2024
f22fdab
set pipeline branch-specific variables
nikellepetrillo Nov 20, 2024
b211c51
revert
nikellepetrillo Nov 20, 2024
441561e
revert
nikellepetrillo Nov 20, 2024
93b09be
Verify checked-out branch
nikellepetrillo Nov 20, 2024
a8f2523
Verify checked-out branch
nikellepetrillo Nov 20, 2024
7ae262a
Verify checked-out branch
nikellepetrillo Nov 20, 2024
23eef10
look at config
nikellepetrillo Nov 20, 2024
f49229c
look at config
nikellepetrillo Nov 20, 2024
bebdb1e
update config methodVersion
nikellepetrillo Nov 20, 2024
78f1e3e
update config methodVersion
nikellepetrillo Nov 20, 2024
b48084f
update config methodVersion
nikellepetrillo Nov 20, 2024
c4e57a1
update config methodVersion
nikellepetrillo Nov 20, 2024
d758cbb
update config methodVersion
nikellepetrillo Nov 20, 2024
1b41e0c
test out config methodVersion
nikellepetrillo Nov 20, 2024
7b97f22
test out config methodVersion
nikellepetrillo Nov 20, 2024
5269367
test out config methodVersion
nikellepetrillo Nov 20, 2024
1da1058
test out config methodVersion
nikellepetrillo Nov 20, 2024
2748295
test out config methodVersion
nikellepetrillo Nov 20, 2024
0ff4317
test out config methodVersion
nikellepetrillo Nov 20, 2024
d9a21a0
methoduri
nikellepetrillo Nov 20, 2024
c01f95a
methoduri
nikellepetrillo Nov 20, 2024
9c1655a
methoduri
nikellepetrillo Nov 20, 2024
3811614
add comments to code
nikellepetrillo Nov 20, 2024
6ba8a90
try to add delay on first push to dockstore
nikellepetrillo Nov 20, 2024
c84c2d5
remove delays
nikellepetrillo Nov 20, 2024
5cd0c2a
test truth branch
nikellepetrillo Nov 26, 2024
3a923be
test truth branch
nikellepetrillo Nov 26, 2024
91a5f8c
def to develop for the moment
nikellepetrillo Nov 26, 2024
08fcd81
def to back to master for the moment
nikellepetrillo Nov 26, 2024
a974831
look for 404 and attempt to delay
nikellepetrillo Nov 26, 2024
fa613b5
look for 404 and attempt to delay
nikellepetrillo Nov 26, 2024
f3c231c
look for 404 and attempt to delay
nikellepetrillo Nov 26, 2024
e5fa16c
more access token lifetime?
nikellepetrillo Nov 27, 2024
059368a
see if token is close to expiring
nikellepetrillo Dec 2, 2024
8bdf384
see if token is close to expiring
nikellepetrillo Dec 2, 2024
a7388db
try differnt gcloud
nikellepetrillo Dec 2, 2024
de221bd
try differnt gcloud
nikellepetrillo Dec 2, 2024
03d5f61
timestamp
nikellepetrillo Dec 2, 2024
ec1364e
echo the time
nikellepetrillo Dec 2, 2024
f5d9d93
echo the time
nikellepetrillo Dec 2, 2024
b9a1cb6
echo the time
nikellepetrillo Dec 2, 2024
0393d9f
echo the time
nikellepetrillo Dec 2, 2024
6c38f12
echo the time
nikellepetrillo Dec 2, 2024
bc71bf1
make token expire after 2 mins
nikellepetrillo Dec 2, 2024
65dcec7
make token expire after 2 mins
nikellepetrillo Dec 2, 2024
a9a3508
break things down
nikellepetrillo Dec 2, 2024
60a68ea
break things down
nikellepetrillo Dec 2, 2024
fb91ad2
break things down
nikellepetrillo Dec 2, 2024
96137dc
Poll for Status and Refresh Token if Expiring
nikellepetrillo Dec 2, 2024
6f8b7e8
Poll for Status and Refresh Token if Expiring
nikellepetrillo Dec 2, 2024
9b8fbf0
Poll for Status and Refresh Token if Expiring
nikellepetrillo Dec 2, 2024
51c94d9
Poll for Status and Refresh Token if Expiring
nikellepetrillo Dec 2, 2024
7ffba17
Poll for Status and Refresh Token if Expiring
nikellepetrillo Dec 2, 2024
c25fe37
Poll for Status and Refresh Token if Expiring
nikellepetrillo Dec 2, 2024
7f783e1
Poll for Status and Refresh Token if Expiring
nikellepetrillo Dec 2, 2024
7e1c2a5
Poll for Status and Refresh Token if Expiring
nikellepetrillo Dec 2, 2024
d02d408
remove a step
nikellepetrillo Dec 3, 2024
5ef130b
use $expiration_time
nikellepetrillo Dec 3, 2024
bad4ce2
move expiration to pythong sciprt
nikellepetrillo Dec 3, 2024
7f81b68
testing with 200
nikellepetrillo Dec 3, 2024
79e7cda
testing with 200
nikellepetrillo Dec 3, 2024
e8bf934
print status code
nikellepetrillo Dec 3, 2024
9e3b312
print status code
nikellepetrillo Dec 3, 2024
d1dbfd1
print status code
nikellepetrillo Dec 3, 2024
fb26921
print status code
nikellepetrillo Dec 3, 2024
7867d84
print status code
nikellepetrillo Dec 3, 2024
0b43690
print status code
nikellepetrillo Dec 3, 2024
5df0ecf
remove logic for inside while loop
nikellepetrillo Dec 3, 2024
889c46a
remove logic for inside while loop
nikellepetrillo Dec 3, 2024
a146054
start over
nikellepetrillo Dec 3, 2024
0929f95
change token lifetime
nikellepetrillo Dec 3, 2024
3de8468
change token lifetime
nikellepetrillo Dec 3, 2024
f0a4149
remove &
nikellepetrillo Dec 3, 2024
11b7817
wait
nikellepetrillo Dec 3, 2024
8a88ef5
move while loop
nikellepetrillo Dec 3, 2024
a748e92
move while loop
nikellepetrillo Dec 3, 2024
df37f33
move while loop
nikellepetrillo Dec 3, 2024
dcd4235
--lifetime 60
nikellepetrillo Dec 3, 2024
1c5dae4
--lifetime 60
nikellepetrillo Dec 3, 2024
132c639
--lifetime 60
nikellepetrillo Dec 3, 2024
10c5dfb
--lifetime 60
nikellepetrillo Dec 3, 2024
69b8e4f
echo acct
nikellepetrillo Dec 3, 2024
50e300e
echo acct
nikellepetrillo Dec 3, 2024
087d5d6
echo acct
nikellepetrillo Dec 3, 2024
a23da82
echo acct
nikellepetrillo Dec 3, 2024
6667580
echo acct
nikellepetrillo Dec 3, 2024
363da5b
echo acct
nikellepetrillo Dec 3, 2024
6ca3eb2
echo acct
nikellepetrillo Dec 3, 2024
514b8dd
echo acct
nikellepetrillo Dec 3, 2024
a8568d4
echo acct
nikellepetrillo Dec 3, 2024
50897cf
wait before submitting any workflows
nikellepetrillo Dec 4, 2024
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