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Unify host genome generation#182

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morsecodist wants to merge 13 commits intomainchanzuckerberg/czid-workflows:mainfrom tmorse-new-host-genome-generation-unificationchanzuckerberg/czid-workflows:tmorse-new-host-genome-generation-unificationCopy head branch name to clipboard

+373-430

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Commits on Feb 1, 2023

• Unify host genome generation

  morsecodist

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  3eaaf70

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Commits on Feb 2, 2023

• add concat unzip step + docker_image_id

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  86a0a38

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• update docker

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  03eade9

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• install docker dependencies

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• gzip inputs

  morsecodist

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• fix file naming

  morsecodist

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Commits on Feb 3, 2023

• python path docker

  morsecodist

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• star gtf flag fix

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Commits on Feb 4, 2023

• syntax

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• fix name outputs

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Commits on Apr 6, 2023

• fix ercc gtf in host-genome generation (#202)

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  rzlim08

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Commits on Apr 26, 2023

• symlink bowtie2 directory (#229)

  rzlim08

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Commits on May 23, 2023

• create a relative symlink (#250)

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