Generate Conversion Script #2
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| name: Generate Conversion Script | |
| on: | |
| workflow_dispatch | |
| permissions: | |
| id-token: write | |
| contents: write | |
| pull-requests: write | |
| jobs: | |
| generate-conversion-script: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.event.pull_request.head.ref }} # checking out the last commit to this branch | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.11 | |
| - name: Python cache | |
| uses: actions/cache@v1 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| pip install -r scripts/migration_assistant/requirements.txt | |
| - name: Retrieve Replaced By Ontology Term Mapping | |
| uses: actions/cache/restore@v3 | |
| with: | |
| path: ./replaced-by.json | |
| key: replaced-by-map | |
| - name: Run Conversion Script Generator | |
| run: | | |
| make generate-conversion-script | |
| - name: Get Version | |
| id: get_version | |
| run: | | |
| echo "old_version=$(make show-current-version)" >> $GITHUB_ENV | |
| - name: setup git | |
| run: | | |
| git config user.name github-actions | |
| git config user.email [email protected] | |
| - name: remove diff files | |
| run: | | |
| git rm --ignore-unmatch ./cellxgene_schema_cli/cellxgene_schema/ontology_files/*_diff.txt | |
| - name: Bump RC to Major Version | |
| run: | | |
| pip install bumpversion | |
| pip install wheel | |
| bumpversion --config-file .bumpversion.cfg prerel --allow-dirty --tag | |
| echo "new_version=$(make show-current-version)" >> $GITHUB_ENV | |
| - name: Create Pull Request | |
| uses: peter-evans/create-pull-request@v5 | |
| with: | |
| commit-message: 'AUTO: update migrate.py schema_version ${{ env.old_version }}->${{ env.new_version }}' | |
| title: 'AUTO: update migrate.py schema_version ${{ env.old_version }}->${{ env.new_version }}' | |
| body: 'This is an automated PR to update migrate.py from schema_version ${{ env.old_version }}->${{ env.new_version }}.' | |
| branch: auto/update-convert-py-to-${{ env.new_version }} | |
| base: main | |
| reviewers: ${{ vars.MIGRATION_REVIEWERS }} | |
| add-paths: | | |
| cellxgene_schema_cli/setup.py | |
| cellxgene_schema_cli/cellxgene_schema/__init__.py | |
| cellxgene_schema_cli/cellxgene_schema/migrate.py | |
| .bumpversion.cfg |