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feat: integrate dry-run with cellxgene-ontology-guide #813

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feat: integrate dry-run with cellxgene-ontology-guide #813

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nayib-jose-gloria
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@nayib-jose-gloria nayib-jose-gloria commented Mar 15, 2024 •
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Reason for Change

Changes

  • update dry run report to use COG
  • remove deprecated code (compute scripts, associated workflows, all_ontology file)
  • update GHAs to only trigger on GENCODE / gene_info.yml updates
  • renamed dir ontology_files --> gencode_files

Notes for Reviewer

  • TODO: integrate with CLI
  • TODO: use official release of COG when available + use with 5.1.0 schema version
  • TODO: update docs re: ontology_files

@nayib-jose-gloria nayib-jose-gloria changed the title feat: integrate with cellxgene-ontology-guide feat: integrate dry-run with cellxgene-ontology-guide Mar 15, 2024
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breaking up into smaller prs

@nayib-jose-gloria nayib-jose-gloria deleted the nayib/use-cog branch October 23, 2024 19:51
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