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Polish stubs with deprecated decorator (pygame-community#2984)
* Remove deprecated features from the stubs * Remove a few more functions * Allow missing stub files in stubcheck.py * Fix allowed stubs * Use regex to avoid repetition * Add back the functions with deprecation docstrings * Forgot one comment * Forgot one import * Use deprecated decorator * Make messages clearer * Forgot about window.pyi * Remove line and add one deprecation * Add decorator to set_system_cursor
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