v2.3 Changes
This release provides a few new features:
- Genomic coordinates can be used to identify mutation consequences
- Mutation position and consequences are reported for non-coding transcripts
- Allele frequencies are reported for colocated variants
- Results are displayed with the most recent run at the top by default (configurable in the menu).
For more information see the help documentation.
INSTALL
64 bit systems only
Linux: Download the MutationMapper-2.3-1.Linux_x86_64.rpm (for RPM-based distros - e.g. CentOS), or MutationMapper-Linux_x86_64-v2.3.deb (for DEB based distros, e.g. Ubuntu) depending on your system and install via your package manager (e.g. sudo dpkg -i MutationMapper-Linux_x86_64-v2.3.deb) or, if your distribution supports it, by double-clicking the downloaded package. For Arch Linux users you may either download the prebuilt package to install via pacman (MutationMapper-Linux_x86_64-v2.3-1-x86_64.pkg.tar.xz) or the tarball (MutationMapper-2.3-1-x86_64_ArchLinux_x64.tar.gz) containing the PKGBUILD and install script.
Mac OS X: Download the MutationMapper-MacOSX-2.3.dmg disk image. Double click to open the downloaded file and drag the MutationMapper application into your Applications folder where it can be opened by double clicking. On recent versions of Mac OS X you will need to access the 'Security & Privacy' settings in System Preferences to allow this app to be opened.
Windows: Download the MutationMapper-2.3-windows-installer.exe installer application. Double click the downloaded file and follow the instructions to install. This will also launch MutationMapper once installed. To launch in future it should be accessible from the Start menu->All Programs->MutationMapper. MutationMapper will be installed to C:\Users[Your Username]\AppData\Local\MutationMapper\MutationMapper.exe.
UNINSTALL
Linux: Uninstall via your package manager (e.g. sudo apt-get remove MutationMapper).
Mac OS X: Drag the MutationMapper application from your Applications folder to the recycle bin.
Windows: MutationMapper should be installed to 'C:\Users[Your Username]\AppData\Local\MutationMapper\MutationMapper.exe'. To uninstall double-click the 'unins000.exe' file in this location. You can also access this location by right-clicking the MutationMapper application from the Start menu, selecting 'Properties' and clicking the 'Open File Location' button in the resulting window.
JAR FILE
To use the jar file download the MutationMapper_v2.3_jar.zip file and unzip. The jar can be run as normal (e.g. java -jar MutationMapper.jar) as long as it remains in the same folder as the enclosed 'lib' directory. Java version 1.8.0_51 or higher is required.