Deployed 9825193 with MkDocs version: 1.6.1

deeporiginbio · Nov 22, 2024 · 2cf3247 · 2cf3247
1 parent c340154
commit 2cf3247
Show file tree

Hide file tree

Showing 41 changed files with 7,306 additions and 1,595 deletions.
diff --git a/404.html b/404.html
@@ -14,15 +14,15 @@
 
 
       <link rel="icon" href="/images/favicon.png">
-      <meta name="generator" content="mkdocs-1.6.0, mkdocs-material-9.5.30">
+      <meta name="generator" content="mkdocs-1.6.1, mkdocs-material-9.5.45">
 
 
 
         <title>CLI and Python client | Deep Origin</title>
 
 
 
-      <link rel="stylesheet" href="/assets/stylesheets/main.3cba04c6.min.css">
+      <link rel="stylesheet" href="/assets/stylesheets/main.0253249f.min.css">
 
 
         <link rel="stylesheet" href="/assets/stylesheets/palette.06af60db.min.css">
@@ -48,7 +48,7 @@
 
       <link rel="stylesheet" href="/stylesheets/extra.css">
 
-    <script>__md_scope=new URL("/",location),__md_hash=e=>[...e].reduce((e,_)=>(e<<5)-e+_.charCodeAt(0),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
+    <script>__md_scope=new URL("/",location),__md_hash=e=>[...e].reduce(((e,_)=>(e<<5)-e+_.charCodeAt(0)),0),__md_get=(e,_=localStorage,t=__md_scope)=>JSON.parse(_.getItem(t.pathname+"."+e)),__md_set=(e,_,t=localStorage,a=__md_scope)=>{try{t.setItem(a.pathname+"."+e,JSON.stringify(_))}catch(e){}}</script>
 
 
 
@@ -88,7 +88,7 @@
     </a>
     <label class="md-header__button md-icon" for="__drawer">
 
-      <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3V6m0 5h18v2H3v-2m0 5h18v2H3v-2Z"/></svg>
+      <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M3 6h18v2H3zm0 5h18v2H3zm0 5h18v2H3z"/></svg>
     </label>
     <div class="md-header__title" data-md-component="header-title">
       <div class="md-header__ellipsis">
@@ -114,7 +114,7 @@
 
       <label class="md-header__button md-icon" for="__search">
 
-        <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5Z"/></svg>
+        <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.52 6.52 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5"/></svg>
       </label>
       <div class="md-search" data-md-component="search" role="dialog">
   <label class="md-search__overlay" for="__search"></label>
@@ -123,15 +123,15 @@
       <input type="text" class="md-search__input" name="query" aria-label="Search" placeholder="Search" autocapitalize="off" autocorrect="off" autocomplete="off" spellcheck="false" data-md-component="search-query" required>
       <label class="md-search__icon md-icon" for="__search">
 
-        <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.516 6.516 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5Z"/></svg>
+        <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M9.5 3A6.5 6.5 0 0 1 16 9.5c0 1.61-.59 3.09-1.56 4.23l.27.27h.79l5 5-1.5 1.5-5-5v-.79l-.27-.27A6.52 6.52 0 0 1 9.5 16 6.5 6.5 0 0 1 3 9.5 6.5 6.5 0 0 1 9.5 3m0 2C7 5 5 7 5 9.5S7 14 9.5 14 14 12 14 9.5 12 5 9.5 5"/></svg>
 
-        <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11h12Z"/></svg>
+        <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M20 11v2H8l5.5 5.5-1.42 1.42L4.16 12l7.92-7.92L13.5 5.5 8 11z"/></svg>
       </label>
       <nav class="md-search__options" aria-label="Search">
 
         <button type="reset" class="md-search__icon md-icon" title="Clear" aria-label="Clear" tabindex="-1">
 
-          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12 19 6.41Z"/></svg>
+          <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M19 6.41 17.59 5 12 10.59 6.41 5 5 6.41 10.59 12 5 17.59 6.41 19 12 13.41 17.59 19 19 17.59 13.41 12z"/></svg>
         </button>
       </nav>
 
@@ -156,7 +156,7 @@
         <a href="https://github.com/deeporiginbio/deeporigin-client" title="Go to repository" class="md-source" data-md-component="source">
   <div class="md-source__icon md-icon">
 
-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
+    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
   </div>
   <div class="md-source__repository">
     deeporiginbio/deeporigin-client
@@ -326,7 +326,7 @@
       <a href="https://github.com/deeporiginbio/deeporigin-client" title="Go to repository" class="md-source" data-md-component="source">
   <div class="md-source__icon md-icon">
 
-    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81z"/></svg>
+    <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 448 512"><!--! Font Awesome Free 6.6.0 by @fontawesome - https://fontawesome.com License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License) Copyright 2024 Fonticons, Inc.--><path d="M439.55 236.05 244 40.45a28.87 28.87 0 0 0-40.81 0l-40.66 40.63 51.52 51.52c27.06-9.14 52.68 16.77 43.39 43.68l49.66 49.66c34.23-11.8 61.18 31 35.47 56.69-26.49 26.49-70.21-2.87-56-37.34L240.22 199v121.85c25.3 12.54 22.26 41.85 9.08 55a34.34 34.34 0 0 1-48.55 0c-17.57-17.6-11.07-46.91 11.25-56v-123c-20.8-8.51-24.6-30.74-18.64-45L142.57 101 8.45 235.14a28.86 28.86 0 0 0 0 40.81l195.61 195.6a28.86 28.86 0 0 0 40.8 0l194.69-194.69a28.86 28.86 0 0 0 0-40.81"/></svg>
   </div>
   <div class="md-source__repository">
     deeporiginbio/deeporigin-client
@@ -784,6 +784,8 @@
 
 
 
+
+
 
 
 
@@ -967,6 +969,27 @@
 
 
 
+
+
+
+
+
+
+    <li class="md-nav__item">
+      <a href="/how-to/data-hub/add-data.html" class="md-nav__link">
+
+
+  <span class="md-ellipsis">
+    Add data to database
+  </span>
+
+
+      </a>
+    </li>
+
+
+
+
           </ul>
         </nav>
 
@@ -1338,14 +1361,14 @@ <h1>404 - Not found</h1>
             </div>
 
 
-  <script>var tabs=__md_get("__tabs");if(Array.isArray(tabs))e:for(var set of document.querySelectorAll(".tabbed-set")){var tab,labels=set.querySelector(".tabbed-labels");for(tab of tabs)for(var label of labels.getElementsByTagName("label"))if(label.innerText.trim()===tab){var input=document.getElementById(label.htmlFor);input.checked=!0;continue e}}</script>
+  <script>var tabs=__md_get("__tabs");if(Array.isArray(tabs))e:for(var set of document.querySelectorAll(".tabbed-set")){var labels=set.querySelector(".tabbed-labels");for(var tab of tabs)for(var label of labels.getElementsByTagName("label"))if(label.innerText.trim()===tab){var input=document.getElementById(label.htmlFor);input.checked=!0;continue e}}</script>
 
 <script>var target=document.getElementById(location.hash.slice(1));target&&target.name&&(target.checked=target.name.startsWith("__tabbed_"))</script>
         </div>
 
           <button type="button" class="md-top md-icon" data-md-component="top" hidden>
 
-  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M13 20h-2V8l-5.5 5.5-1.42-1.42L12 4.16l7.92 7.92-1.42 1.42L13 8v12Z"/></svg>
+  <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M13 20h-2V8l-5.5 5.5-1.42-1.42L12 4.16l7.92 7.92-1.42 1.42L13 8z"/></svg>
   Back to top
 </button>
 
@@ -1379,10 +1402,10 @@ <h1>404 - Not found</h1>
       <div class="md-progress" data-md-component="progress" role="progressbar"></div>
 
 
-    <script id="__config" type="application/json">{"base": "/", "features": ["announce.dismiss", "content.code.annotate", "content.code.copy", "content.tabs.link", "content.tooltips", "navigation.footer", "navigation.indexes", "navigation.instant", "navigation.instant.prefetch", "navigation.instant.preview", "navigation.instant.progress", "navigation.sections", "navigation.path", "navigation.tabs", "navigation.top", "navigation.tracking", "search.suggest", "toc.follow"], "search": "/assets/javascripts/workers/search.b8dbb3d2.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
+    <script id="__config" type="application/json">{"base": "/", "features": ["announce.dismiss", "content.code.annotate", "content.code.copy", "content.tabs.link", "content.tooltips", "navigation.footer", "navigation.indexes", "navigation.instant", "navigation.instant.prefetch", "navigation.instant.preview", "navigation.instant.progress", "navigation.sections", "navigation.path", "navigation.tabs", "navigation.top", "navigation.tracking", "search.suggest", "toc.follow"], "search": "/assets/javascripts/workers/search.6ce7567c.min.js", "translations": {"clipboard.copied": "Copied to clipboard", "clipboard.copy": "Copy to clipboard", "search.result.more.one": "1 more on this page", "search.result.more.other": "# more on this page", "search.result.none": "No matching documents", "search.result.one": "1 matching document", "search.result.other": "# matching documents", "search.result.placeholder": "Type to start searching", "search.result.term.missing": "Missing", "select.version": "Select version"}}</script>
 
 
-      <script src="/assets/javascripts/bundle.fe8b6f2b.min.js"></script>
+      <script src="/assets/javascripts/bundle.83f73b43.min.js"></script>
 
 
   </body>

diff --git a/assets/_mkdocstrings.css b/assets/_mkdocstrings.css
@@ -26,20 +26,33 @@
   float: right;
 }
 
+/* Parameter headings must be inline, not blocks. */
+.doc-heading-parameter {
+  display: inline;
+}
+
+/* Prefer space on the right, not the left of parameter permalinks. */
+.doc-heading-parameter .headerlink {
+  margin-left: 0 !important;
+  margin-right: 0.2rem;
+}
+
 /* Backward-compatibility: docstring section titles in bold. */
 .doc-section-title {
   font-weight: bold;
 }
 
 /* Symbols in Navigation and ToC. */
-:root,
+:root, :host,
 [data-md-color-scheme="default"] {
+  --doc-symbol-parameter-fg-color: #df50af;
   --doc-symbol-attribute-fg-color: #953800;
   --doc-symbol-function-fg-color: #8250df;
   --doc-symbol-method-fg-color: #8250df;
   --doc-symbol-class-fg-color: #0550ae;
   --doc-symbol-module-fg-color: #5cad0f;
 
+  --doc-symbol-parameter-bg-color: #df50af1a;
   --doc-symbol-attribute-bg-color: #9538001a;
   --doc-symbol-function-bg-color: #8250df1a;
   --doc-symbol-method-bg-color: #8250df1a;
@@ -48,12 +61,14 @@
 }
 
 [data-md-color-scheme="slate"] {
+  --doc-symbol-parameter-fg-color: #ffa8cc;
   --doc-symbol-attribute-fg-color: #ffa657;
   --doc-symbol-function-fg-color: #d2a8ff;
   --doc-symbol-method-fg-color: #d2a8ff;
   --doc-symbol-class-fg-color: #79c0ff;
   --doc-symbol-module-fg-color: #baff79;
 
+  --doc-symbol-parameter-bg-color: #ffa8cc1a;
   --doc-symbol-attribute-bg-color: #ffa6571a;
   --doc-symbol-function-bg-color: #d2a8ff1a;
   --doc-symbol-method-bg-color: #d2a8ff1a;
@@ -68,6 +83,15 @@ code.doc-symbol {
   font-weight: bold;
 }
 
+code.doc-symbol-parameter {
+  color: var(--doc-symbol-parameter-fg-color);
+  background-color: var(--doc-symbol-parameter-bg-color);
+}
+
+code.doc-symbol-parameter::after {
+  content: "param";
+}
+
 code.doc-symbol-attribute {
   color: var(--doc-symbol-attribute-fg-color);
   background-color: var(--doc-symbol-attribute-bg-color);

diff --git a/assets/javascripts/bundle.83f73b43.min.js b/assets/javascripts/bundle.83f73b43.min.js