include parser fix scalefacestimation

deeptools · Jan 17, 2024 · 8fc7c79 · 8fc7c79
1 parent ae7aed4
commit 8fc7c79
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diff --git a/CHANGES.txt b/CHANGES.txt
@@ -6,6 +6,7 @@
 * documentation changes to improve ESS tab, table constraints have been lifted & sphinx_rtd_theme to v2.0.0
 * upload artifact in gh test runner pinned to 3
 * Try to get the number of processors from sched_getaffinity, to avoid using to many in job submissions for example. #1199
+* Fix typo in estimateScaleFactor that fixes broken argparsing. #1286
 
 3.5.4
 * error handling and cases for bwAverage with >2 samples

diff --git a/deeptools/estimateScaleFactor.py b/deeptools/estimateScaleFactor.py
@@ -98,7 +98,7 @@ def main(args=None):
     between to samples
 
     """
-    args = parseArguments().parse_args(args)
+    args = parseArguments(args)
     if len(args.bamfiles) > 2:
         print("SES method to estimate scale factors only works for two samples")
         exit(0)