{lang}[gfbf/2023.09] SciPy-bundle v2023.11 #19318

boegel · 2023-11-24T20:52:12Z

(created using eb --new-pr)
requires:

boegel · 2023-11-24T21:51:52Z

@boegelbot please test @ generoso
EB_ARGS="--include-easyblocks-from-pr 3041"

boegelbot · 2023-11-24T21:55:07Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=19318 EB_ARGS="--include-easyblocks-from-pr 3041" EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19318 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12249

Test results coming soon (I hope)...

- notification for comment with ID 1826103283 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegel · 2023-11-24T22:15:52Z

Test report by @boegel
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3041
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node3144.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/boegel/fee3a250fa1ce4a3be673b4bdbc05eb0 for a full test report.

boegelbot · 2023-11-24T23:01:02Z

Test report by @boegelbot
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3041
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns2 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/481781d20124aed288f9f912106d6156 for a full test report.

boegel · 2023-11-24T23:07:14Z

@boegelbot please test @ jsc-zen2
EB_ARGS="--include-easyblocks-from-pr 3041"

boegelbot · 2023-11-24T23:10:10Z

@boegel: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=19318 EB_ARGS="--include-easyblocks-from-pr 3041" EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_19318 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 3797

Test results coming soon (I hope)...

- notification for comment with ID 1826129015 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-11-24T23:54:05Z

Test report by @boegelbot
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3041
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/0c5e885f891eaaa719856f7a497837d2 for a full test report.

…asyconfigs into 20231124215207_new_pr_SciPy-bundle202311

branfosj · 2023-11-25T15:05:05Z

Test report by @branfosj
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3041
SUCCESS
Build succeeded for 9 out of 9 (3 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/89d420e9dd246d6d7f0026b5b39d0227 for a full test report.

boegel · 2023-11-26T15:58:37Z

Test report by @boegel
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3041
FAILED
Build succeeded for 2 out of 3 (3 easyconfigs in total)
aarch64-neoverse-v1-node2.int.aws-rocky88-202310.eessi.io - Linux Rocky Linux 8.8, AArch64, ARM UNKNOWN (neoverse_n1), Python 3.6.8
See https://gist.github.com/boegel/1ffbb5630cafecc6112744a3f4a579d3 for a full test report.

edit: handful of failing tests on aarch64, which is not a surprise, not a blocker for this PR

boegel · 2023-11-26T21:16:46Z

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node4203.shinx.os - Linux RHEL 8.8, x86_64, AMD EPYC 9654 96-Core Processor (x86_64_v4), Python 3.6.8
See https://gist.github.com/boegel/e8f99b8334081bb9d570a68cdf1ef2c0 for a full test report.

akesandgren

LGTM

akesandgren · 2023-11-27T06:52:04Z

Going in, thanks @boegel!

SebastianAchilles · 2023-11-28T14:00:00Z

Test report by @SebastianAchilles
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3041
FAILED
Build succeeded for 2 out of 3 (3 easyconfigs in total)
jrc0880.jureca - Linux Rocky Linux 8.8, x86_64, Intel(R) Xeon(R) Platinum 8452Y (sapphirerapids), 4 x NVIDIA NVIDIA H100 PCIe, 535.104.12, Python 3.6.8
See https://gist.github.com/SebastianAchilles/eac5a313e6631a99349497bda4ad6c77 for a full test report.

SebastianAchilles · 2023-11-28T15:28:38Z

Test report by @SebastianAchilles
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3041
FAILED
Build succeeded for 2 out of 3 (3 easyconfigs in total)
jrc0871.jureca - Linux Rocky Linux 8.8, AArch64, ARM UNKNOWN (neoverse_n1), 2 x NVIDIA NVIDIA A100-PCIE-40GB, 535.104.12, Python 3.6.8
See https://gist.github.com/SebastianAchilles/4a694a7e72c2b7435910fc630633145f for a full test report.

branfosj · 2023-11-28T19:28:52Z

Test report by @branfosj
FAILED
Build succeeded for 53 out of 54 (3 easyconfigs in total)
bear-pg0207u20a - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8480CL (icelake), Python 3.6.8
See https://gist.github.com/branfosj/3001cc3ba68e24f924ec7d0eb77468a2 for a full test report.

branfosj · 2023-11-28T19:41:41Z

Test report by @branfosj
SUCCESS
Build succeeded for 57 out of 57 (3 easyconfigs in total)
bear-pg0208u26a - Linux RHEL 8.6, x86_64, AMD EPYC 9554 64-Core Processor (x86_64_v4), Python 3.6.8
See https://gist.github.com/branfosj/3af518af26c7697ed9d0118d0eb49e95 for a full test report.

branfosj · 2023-11-28T19:52:56Z

/rds/projects/2017/branfosj-rse/easybuild/EL8-spr/software/binutils/2.40-GCCcore-13.2.0/bin/ld: build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/numpy/core/src/npysort/simd_qsort_16bit.dispatch.avx512_icl.o: in function `void avx512_qsort<_Float16>(_Float16*, long)':
/dev/shm/branfosj/build-up-EL8/SciPybundle/2023.11/gfbf-2023.09/numpy/numpy-1.26.2/numpy/core/src/npysort/x86-simd-sort/src/avx512fp16-16bit-qsort.hpp:161: multiple definition of `void avx512_qsort<_Float16>(_Float16*, long)'; build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/numpy/core/src/npysort/simd_qsort_16bit.dispatch.avx512_spr.o:/dev/shm/branfosj/build-up-EL8/SciPybundle/2023.11/gfbf-2023.09/numpy/numpy-1.26.2/numpy/core/src/npysort/x86-simd-sort/src/avx512fp16-16bit-qsort.hpp:161: first defined here                     
/rds/projects/2017/branfosj-rse/easybuild/EL8-spr/software/binutils/2.40-GCCcore-13.2.0/bin/ld: build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/numpy/core/src/npysort/simd_qsort_16bit.dispatch.avx512_icl.o: in function `void avx512_qselect<_Float16>(_Float16*, long, long)':
/dev/shm/branfosj/build-up-EL8/SciPybundle/2023.11/gfbf-2023.09/numpy/numpy-1.26.2/numpy/core/src/npysort/x86-simd-sort/src/avx512fp16-16bit-qsort.hpp:149: multiple definition of `void avx512_qselect<_Float16>(_Float16*, long, long)'; build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/numpy/core/src/npysort/simd_qsort_16bit.dispatch.avx512_spr.o:/dev/shm/branfosj/build-up-EL8/SciPybundle/2023.11/gfbf-2023.09/numpy/numpy-1.26.2/numpy/core/src/npysort/x86-simd-sort/src/avx512fp16-16bit-qsort.hpp:149: first defined here             
collect2: error: ld returned 1 exit status

see numpy/numpy#25274

boegel added the update label Nov 24, 2023

{lang}[gfbf/2023.09] SciPy-bundle v2023.11

d6d159b

boegel force-pushed the 20231124215207_new_pr_SciPy-bundle202311 branch from ac3679f to d6d159b Compare November 24, 2023 20:59

boegel changed the title ~~requires: * https://github.com/easybuilders/easybuild-easyblocks/pull/3041 * #19317~~ {lang}[gfbf/2023.09] SciPy-bundle v2023.11 Nov 24, 2023

boegel added this to the next release (4.9.0?) milestone Nov 24, 2023

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Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

b33afa6

…asyconfigs into 20231124215207_new_pr_SciPy-bundle202311

SebastianAchilles added the 2023b label Nov 26, 2023

akesandgren approved these changes Nov 27, 2023

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akesandgren merged commit ee57c20 into easybuilders:develop Nov 27, 2023
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boegel deleted the 20231124215207_new_pr_SciPy-bundle202311 branch November 27, 2023 16:33

This was referenced Dec 14, 2023

Fix numpy build on Sapphire Rapids CPUs in SciPy-bundle-2023.07-gfbf-2023a #19419

Merged

Fix numpy build on Sapphire Rapids CPUs in SciPy-bundle-2023.11-gfbf-2023.09 #19425

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{lang}[gfbf/2023.09] SciPy-bundle v2023.11 #19318

{lang}[gfbf/2023.09] SciPy-bundle v2023.11 #19318

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{lang}[gfbf/2023.09] SciPy-bundle v2023.11 #19318

{lang}[gfbf/2023.09] SciPy-bundle v2023.11 #19318

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