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Feat/sim search b2f#77

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moilerat wants to merge 38 commits intomasterecotaxa/ecotaxa_back:masterfrom feat/sim_search_b2fecotaxa/ecotaxa_back:feat/sim_search_b2fCopy head branch name to clipboard

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Commits on May 2, 2024

• wip sim search integration

  moilerat

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  24dd1f0

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• move feature extraction to import

  

  emmaamblard

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  moilerat

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  5a2ffd4

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• - JsonDict -> List[Dict]

  

  bea777515

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• samples are not correct, we need to have a similar endpoint for similarity search to object_set/{project_id}/query

  moilerat

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  d42cd2c

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• typo in endpoint that doesn't explain the fact it is not reachable from front to be continued....

  moilerat

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• add seed_object_id in filter to get them in api on back

  moilerat

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• I would rather put out of github the .idea

  moilerat

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  c3905aa

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• fix typo in endpoint

  moilerat

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  263a359

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• first working version of unsupervised search in ecotaxa by lovnower, wip

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  39c615f

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• cleaning

  moilerat

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  b1c166f

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• replace obj_cnn_features table with obj_cnn_features_vector

  

  emmaamblard

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  moilerat

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  3d16a35

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• add basic similarity search as a job + test

  

  emmaamblard

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  moilerat

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  2b6e387

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• attempt to fix import bug in simsearch test

  

  emmaamblard

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  moilerat

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  a4d79f7

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• add filters to similarity search

  

  emmaamblard

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  moilerat

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  eb21e16

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• remove print and broken test

  

  emmaamblard

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  moilerat

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  ddcd5ab

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• launch feature extraction job before similarity search

  

  emmaamblard

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  moilerat

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  f3d273a

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• add similarity scores + test similarity search with filters on taxo

  

  emmaamblard

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  moilerat

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  e5a0c08

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• fix filters bug

  

  emmaamblard

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  moilerat

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  15c1786

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• replace function used in similarity search endpoint

  

  emmaamblard

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  moilerat

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  353ced8

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• remove limit to similarity search results set by the object_set query

  

  emmaamblard

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• remove prints

  

  emmaamblard

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  moilerat

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  b4a5abc

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• add blank new line in README to test right to commit and config of local repo on lovnower@niko by VR

  

  Victor Reutenauer

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  moilerat

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  d7e2311

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• first version script upgrade db with alchemy

  

  Victor Reutenauer

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  moilerat

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  d794cf5

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• mention emma and lovnower for ss and cnnvector in license (only comment change) https://app.clickup.com/t/86bwqp6jp

  moilerat

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  405f99d

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• fix check that cnn_features are selected https://github.com/ecotaxa/ecotaxa_back/pull/72/files/64579a46644272002e96bae7b255c960d41ba80f#diff-94bbcc1b33ad7aae0725c6a86f78b32f40d8686cfe46c8594267baef…

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  moilerat

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• trying to take into account @grololo remark #72

  moilerat

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  2111b96

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• update test value for missing descriptors in test ss #72

  

  Victor Reutenauer

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  moilerat

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  7aeeb25

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• change version migration after following different advice

  

  Victor Reutenauer

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  moilerat

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  3cd37d0

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• using pgvector/pgvector:pg16 docker in NRT github actions tests after @grololo advice

  moilerat

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• remove blank line to force github actions that weren't trigge by change in their config

  moilerat

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  c5f88b9

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• remove useless migration create and drop linked to 'scories' with R in pg

  moilerat

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• remove 'scories' due to different management of password in prod and dev (from my own's understanding)

  moilerat

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  9b257ec

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• script migrate data cnnfeature vector

  moilerat

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  02d6551

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• continue merge fix conflicts between @grololo commit on feat/sim_search_b2f

  moilerat

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  2181476

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• fix: upgrade script for new pgvector table

  

  grololo06

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  moilerat

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  1259375

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• remove useless endpoint ss

  

  Victor Reutenauer

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  moilerat

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  4646c2f

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• protect some call in ss and change test to use existing endpoint and not ea endpoint that wasn't used in prod

  moilerat

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  05c5293

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• use unique ss endpoint in nrt, didn't test but will look at tox

  moilerat

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