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add links to WebProtege instance
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jsimonclark authored Jul 16, 2024
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Expand Up @@ -19,22 +19,12 @@ Reference documentation is available [here](https://emmo-repo.github.io/domain-e

Here is some information to help you get started working with the ontology in python and creating you own instances of Linked Data. For more information, please see the [Getting Started](https://emmo-repo.github.io/domain-electrochemistry/pages/getstarted.html) and [Examples](https://emmo-repo.github.io/domain-electrochemistry/pages/examples.html) section of the documentation.

## Reference IRIs

The table below contains a quick cheat sheet of IRIs for accessing different files from the ontology
The import structure is summarized in the following table:

| IRI | Description |
| -------------------------------------------------------------- | ----------------------------- |
| `https://w3id.org/emmo/domain/electrochemistry` | Base Asserted Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/inferred` | Base Pre-Inferred Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/latest` | Latest Asserted Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/source` | Source of Asserted Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/context` | Latest JSON-LD Context File |
| `https://w3id.org/emmo/domain/electrochemistry/{VERSION}` | Version of Asserted Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/{VERSION}/...` | ... follows same logic above |
## Protégé

*IRI directs to human readable documentation if called from the web browser and to the source .ttl file if called from an application
Protege is a open-source graphical editor for creating and exploring ontologies. You can [download a local copy](https://protege.stanford.edu/) or explore the pre-inferred ontology in a [web-based instance](https://webprotege.stanford.edu/#projects/1f6fd01b-b127-4bc0-a998-ee269797be87/edit/Classes) (requires registering for a free account). Some suggested entry points for new users are:
- [ElectrochemicalCell](https://webprotege.stanford.edu/#projects/1f6fd01b-b127-4bc0-a998-ee269797be87/edit/Classes?selection=Class(%3Chttps://w3id.org/emmo/domain/electrochemistry%23electrochemistry_6f2c88c9_5c04_4953_a298_032cc3ab9b77%3E))
- [Electrode](https://webprotege.stanford.edu/#projects/1f6fd01b-b127-4bc0-a998-ee269797be87/edit/Classes?selection=Class(%3Chttps://w3id.org/emmo/domain/electrochemistry%23electrochemistry_0f007072_a8dd_4798_b865_1bf9363be627%3E))
- [Electrolyte](https://webprotege.stanford.edu/#projects/1f6fd01b-b127-4bc0-a998-ee269797be87/edit/Classes?selection=Class(%3Chttps://w3id.org/emmo/domain/electrochemistry%23electrochemistry_fb0d9eef_92af_4628_8814_e065ca255d59%3E))

## Python
There are two common ways to work with the ontology in python: loading the ontology as a graph using [rdflib](https://rdflib.readthedocs.io/en/stable/) or exploring the content of the ontology using [EMMOntoPy](https://github.com/emmo-repo/EMMOntoPy). Examples of both are provided below.
Expand Down Expand Up @@ -124,8 +114,24 @@ This domain ontology supports the creation of Linked Data in any RDF-supported f
]
}
```
## Reference IRIs

### Acknowledgements
The table below contains a quick cheat sheet of IRIs for accessing different files from the ontology
The import structure is summarized in the following table:

| IRI | Description |
| -------------------------------------------------------------- | ----------------------------- |
| `https://w3id.org/emmo/domain/electrochemistry` | Base Asserted Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/inferred` | Base Pre-Inferred Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/latest` | Latest Asserted Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/source` | Source of Asserted Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/context` | Latest JSON-LD Context File |
| `https://w3id.org/emmo/domain/electrochemistry/{VERSION}` | Version of Asserted Ontology* |
| `https://w3id.org/emmo/domain/electrochemistry/{VERSION}/...` | ... follows same logic above |

*IRI directs to human readable documentation if called from the web browser and to the source .ttl file if called from an application.

# Acknowledgements

<img src="docs/assets/img/Flag_of_Europe.png" alt="EU-Flag" width="100">

Expand All @@ -134,9 +140,5 @@ This project has received support from European Union research and innovation pr
* [957189 - BIG-MAP](http://www.big-map.eu/)
* [101104022 - Battery2030+](https://battery2030.eu/)

## License

The Electrochemistry Domain Ontology is released under the [Creative Commons Attribution 4.0 International](https://creativecommons.org/licenses/by/4.0/legalcode) license (CC BY 4.0).

[1]: https://github.com/emmo-repo/EMMO
[2]: https://www.big-map.eu

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