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Use CRAM reference in samtools commands #236

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fa2k wants to merge 1 commit into epi2me-labs:master from fa2k:master

fa2k commented Jan 13, 2025

Fixes #235 for me.

This supplies the CRAM reference to the samtools commands, so they can use it to decompress the file.


          Use CRAM reference in samtools commands

93f9881

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SamStudio8 commented Jan 13, 2025

Thanks @fa2k - I think we need -T (--reference) in order to pass the ref in here. We'll have a fix in the next release.

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