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diff --git a/...s/figure-html/1x0Cnk2Wcsg8HYkmXnXo_0PxmYCxAwzVrUQzb8DUDvTA_g24731cad425_0_0.png b/...s/figure-html/1x0Cnk2Wcsg8HYkmXnXo_0PxmYCxAwzVrUQzb8DUDvTA_g24731cad425_0_0.png
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diff --git a/...s/figure-html/1x0Cnk2Wcsg8HYkmXnXo_0PxmYCxAwzVrUQzb8DUDvTA_g290614d43ec_0_2.png b/...s/figure-html/1x0Cnk2Wcsg8HYkmXnXo_0PxmYCxAwzVrUQzb8DUDvTA_g290614d43ec_0_2.png
diff --git a/docs/no_toc/404.html b/docs/no_toc/404.html
@@ -6,14 +6,13 @@
   <meta http-equiv="X-UA-Compatible" content="IE=edge" />
   <title>Page not found | GitHub Automation for Scientists</title>
   <meta name="description" content="Page not found | GitHub Automation for Scientists" />
-  <meta name="generator" content="bookdown 0.24 and GitBook 2.6.7" />
+  <meta name="generator" content="bookdown 0.39.1 and GitBook 2.6.7" />
 
   <meta property="og:title" content="Page not found | GitHub Automation for Scientists" />
   <meta property="og:type" content="book" />
 
 
 
-
 
   <meta name="twitter:card" content="summary" />
   <meta name="twitter:title" content="Page not found | GitHub Automation for Scientists" />
@@ -31,7 +30,6 @@
   <link rel="shortcut icon" href="assets/ITN_favicon.ico" type="image/x-icon" />
 
 
-<script src="libs/header-attrs-2.10/header-attrs.js"></script>
 <script src="libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/fuse.min.js"></script>
 <link href="libs/gitbook-2.6.7/css/style.css" rel="stylesheet" />
@@ -49,8 +47,9 @@
 
 
 
-<link href="libs/anchor-sections-1.0.1/anchor-sections.css" rel="stylesheet" />
-<script src="libs/anchor-sections-1.0.1/anchor-sections.js"></script>
+<link href="libs/anchor-sections-1.1.0/anchor-sections.css" rel="stylesheet" />
+<link href="libs/anchor-sections-1.1.0/anchor-sections-hash.css" rel="stylesheet" />
+<script src="libs/anchor-sections-1.1.0/anchor-sections.js"></script>
 
 <!-- Google tag (gtag.js) -->
 <script async src="https://www.googletagmanager.com/gtag/js?id=G-8K2XL467QV"></script>
@@ -64,6 +63,10 @@
 
 
 
+<style type="text/css">
+
+  div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
+</style>
 <style type="text/css">
 /* Used with Pandoc 2.11+ new --citeproc when CSL is used */
 div.csl-bib-body { }

diff --git a/docs/no_toc/About.md b/docs/no_toc/About.md
@@ -28,76 +28,82 @@ These credits are based on our [course contributors table guidelines](https://ww
 
 ```
 ## ─ Session info ───────────────────────────────────────────────────────────────
-##  setting  value                       
-##  version  R version 4.0.2 (2020-06-22)
-##  os       Ubuntu 20.04.5 LTS          
-##  system   x86_64, linux-gnu           
-##  ui       X11                         
-##  language (EN)                        
-##  collate  en_US.UTF-8                 
-##  ctype    en_US.UTF-8                 
-##  tz       Etc/UTC                     
-##  date     2024-03-15                  
+##  setting  value
+##  version  R version 4.3.2 (2023-10-31)
+##  os       Ubuntu 22.04.4 LTS
+##  system   x86_64, linux-gnu
+##  ui       X11
+##  language (EN)
+##  collate  en_US.UTF-8
+##  ctype    en_US.UTF-8
+##  tz       Etc/UTC
+##  date     2024-10-10
+##  pandoc   3.1.1 @ /usr/local/bin/ (via rmarkdown)
 ## 
 ## ─ Packages ───────────────────────────────────────────────────────────────────
-##  package     * version date       lib source                            
-##  askpass       1.1     2019-01-13 [1] RSPM (R 4.0.3)                    
-##  assertthat    0.2.1   2019-03-21 [1] RSPM (R 4.0.5)                    
-##  bookdown      0.24    2024-03-13 [1] Github (rstudio/bookdown@88bc4ea) 
-##  bslib         0.6.1   2023-11-28 [1] CRAN (R 4.0.2)                    
-##  cachem        1.0.8   2023-05-01 [1] CRAN (R 4.0.2)                    
-##  callr         3.5.0   2020-10-08 [1] RSPM (R 4.0.2)                    
-##  cli           3.6.2   2023-12-11 [1] CRAN (R 4.0.2)                    
-##  crayon        1.3.4   2017-09-16 [1] RSPM (R 4.0.0)                    
-##  desc          1.2.0   2018-05-01 [1] RSPM (R 4.0.3)                    
-##  devtools      2.3.2   2020-09-18 [1] RSPM (R 4.0.3)                    
-##  digest        0.6.25  2020-02-23 [1] RSPM (R 4.0.0)                    
-##  ellipsis      0.3.1   2020-05-15 [1] RSPM (R 4.0.3)                    
-##  evaluate      0.23    2023-11-01 [1] CRAN (R 4.0.2)                    
-##  fansi         0.4.1   2020-01-08 [1] RSPM (R 4.0.0)                    
-##  fastmap       1.1.1   2023-02-24 [1] CRAN (R 4.0.2)                    
-##  fs            1.5.0   2020-07-31 [1] RSPM (R 4.0.3)                    
-##  glue          1.4.2   2020-08-27 [1] RSPM (R 4.0.5)                    
-##  hms           0.5.3   2020-01-08 [1] RSPM (R 4.0.0)                    
-##  htmltools     0.5.7   2023-11-03 [1] CRAN (R 4.0.2)                    
-##  httr          1.4.2   2020-07-20 [1] RSPM (R 4.0.3)                    
-##  jquerylib     0.1.4   2021-04-26 [1] CRAN (R 4.0.2)                    
-##  jsonlite      1.7.1   2020-09-07 [1] RSPM (R 4.0.2)                    
-##  knitr         1.33    2024-03-13 [1] Github (yihui/knitr@a1052d1)      
-##  lifecycle     1.0.4   2023-11-07 [1] CRAN (R 4.0.2)                    
-##  magrittr      2.0.3   2022-03-30 [1] CRAN (R 4.0.2)                    
-##  memoise       2.0.1   2021-11-26 [1] CRAN (R 4.0.2)                    
-##  openssl       1.4.3   2020-09-18 [1] RSPM (R 4.0.3)                    
-##  ottrpal       1.2.1   2024-03-13 [1] Github (jhudsl/ottrpal@48e8c44)   
-##  pillar        1.9.0   2023-03-22 [1] CRAN (R 4.0.2)                    
-##  pkgbuild      1.1.0   2020-07-13 [1] RSPM (R 4.0.2)                    
-##  pkgconfig     2.0.3   2019-09-22 [1] RSPM (R 4.0.3)                    
-##  pkgload       1.1.0   2020-05-29 [1] RSPM (R 4.0.3)                    
-##  prettyunits   1.1.1   2020-01-24 [1] RSPM (R 4.0.3)                    
-##  processx      3.4.4   2020-09-03 [1] RSPM (R 4.0.2)                    
-##  ps            1.4.0   2020-10-07 [1] RSPM (R 4.0.2)                    
-##  R6            2.4.1   2019-11-12 [1] RSPM (R 4.0.0)                    
-##  readr         1.4.0   2020-10-05 [1] RSPM (R 4.0.2)                    
-##  remotes       2.2.0   2020-07-21 [1] RSPM (R 4.0.3)                    
-##  rlang         1.1.3   2024-01-10 [1] CRAN (R 4.0.2)                    
-##  rmarkdown     2.10    2024-03-13 [1] Github (rstudio/rmarkdown@02d3c25)
-##  rprojroot     2.0.4   2023-11-05 [1] CRAN (R 4.0.2)                    
-##  sass          0.4.8   2023-12-06 [1] CRAN (R 4.0.2)                    
-##  sessioninfo   1.1.1   2018-11-05 [1] RSPM (R 4.0.3)                    
-##  stringi       1.5.3   2020-09-09 [1] RSPM (R 4.0.3)                    
-##  stringr       1.4.0   2019-02-10 [1] RSPM (R 4.0.3)                    
-##  testthat      3.0.1   2024-03-13 [1] Github (R-lib/testthat@e99155a)   
-##  tibble        3.2.1   2023-03-20 [1] CRAN (R 4.0.2)                    
-##  usethis       1.6.3   2020-09-17 [1] RSPM (R 4.0.2)                    
-##  utf8          1.1.4   2018-05-24 [1] RSPM (R 4.0.3)                    
-##  vctrs         0.6.5   2023-12-01 [1] CRAN (R 4.0.2)                    
-##  withr         2.3.0   2020-09-22 [1] RSPM (R 4.0.2)                    
-##  xfun          0.26    2024-03-13 [1] Github (yihui/xfun@74c2a66)       
-##  xml2          1.3.2   2020-04-23 [1] RSPM (R 4.0.3)                    
-##  yaml          2.2.1   2020-02-01 [1] RSPM (R 4.0.3)                    
+##  package     * version date (UTC) lib source
+##  askpass       1.2.0   2023-09-03 [1] RSPM (R 4.3.0)
+##  bookdown      0.39.1  2024-06-11 [1] Github (rstudio/bookdown@f244cf1)
+##  bslib         0.6.1   2023-11-28 [1] RSPM (R 4.3.0)
+##  cachem        1.0.8   2023-05-01 [1] RSPM (R 4.3.0)
+##  cli           3.6.2   2023-12-11 [1] RSPM (R 4.3.0)
+##  devtools      2.4.5   2022-10-11 [1] RSPM (R 4.3.0)
+##  digest        0.6.34  2024-01-11 [1] RSPM (R 4.3.0)
+##  ellipsis      0.3.2   2021-04-29 [1] RSPM (R 4.3.0)
+##  evaluate      0.23    2023-11-01 [1] RSPM (R 4.3.0)
+##  fansi         1.0.6   2023-12-08 [1] RSPM (R 4.3.0)
+##  fastmap       1.1.1   2023-02-24 [1] RSPM (R 4.3.0)
+##  fs            1.6.3   2023-07-20 [1] RSPM (R 4.3.0)
+##  glue          1.7.0   2024-01-09 [1] RSPM (R 4.3.0)
+##  hms           1.1.3   2023-03-21 [1] RSPM (R 4.3.0)
+##  htmltools     0.5.7   2023-11-03 [1] RSPM (R 4.3.0)
+##  htmlwidgets   1.6.4   2023-12-06 [1] RSPM (R 4.3.0)
+##  httpuv        1.6.14  2024-01-26 [1] RSPM (R 4.3.0)
+##  httr          1.4.7   2023-08-15 [1] RSPM (R 4.3.0)
+##  jquerylib     0.1.4   2021-04-26 [1] RSPM (R 4.3.0)
+##  jsonlite      1.8.8   2023-12-04 [1] RSPM (R 4.3.0)
+##  knitr         1.47.3  2024-06-11 [1] Github (yihui/knitr@e1edd34)
+##  later         1.3.2   2023-12-06 [1] RSPM (R 4.3.0)
+##  lifecycle     1.0.4   2023-11-07 [1] RSPM (R 4.3.0)
+##  magrittr      2.0.3   2022-03-30 [1] RSPM (R 4.3.0)
+##  memoise       2.0.1   2021-11-26 [1] RSPM (R 4.3.0)
+##  mime          0.12    2021-09-28 [1] RSPM (R 4.3.0)
+##  miniUI        0.1.1.1 2018-05-18 [1] RSPM (R 4.3.0)
+##  openssl       2.1.1   2023-09-25 [1] RSPM (R 4.3.0)
+##  ottrpal       1.2.1   2024-06-11 [1] Github (jhudsl/ottrpal@828539f)
+##  pillar        1.9.0   2023-03-22 [1] RSPM (R 4.3.0)
+##  pkgbuild      1.4.3   2023-12-10 [1] RSPM (R 4.3.0)
+##  pkgconfig     2.0.3   2019-09-22 [1] RSPM (R 4.3.0)
+##  pkgload       1.3.4   2024-01-16 [1] RSPM (R 4.3.0)
+##  profvis       0.3.8   2023-05-02 [1] RSPM (R 4.3.0)
+##  promises      1.2.1   2023-08-10 [1] RSPM (R 4.3.0)
+##  purrr         1.0.2   2023-08-10 [1] RSPM (R 4.3.0)
+##  R6            2.5.1   2021-08-19 [1] RSPM (R 4.3.0)
+##  Rcpp          1.0.12  2024-01-09 [1] RSPM (R 4.3.0)
+##  readr         2.1.5   2024-01-10 [1] RSPM (R 4.3.0)
+##  remotes       2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0)
+##  rlang         1.1.4   2024-06-04 [1] CRAN (R 4.3.2)
+##  rmarkdown     2.27.1  2024-06-11 [1] Github (rstudio/rmarkdown@e1c93a9)
+##  sass          0.4.8   2023-12-06 [1] RSPM (R 4.3.0)
+##  sessioninfo   1.2.2   2021-12-06 [1] RSPM (R 4.3.0)
+##  shiny         1.8.0   2023-11-17 [1] RSPM (R 4.3.0)
+##  stringi       1.8.3   2023-12-11 [1] RSPM (R 4.3.0)
+##  stringr       1.5.1   2023-11-14 [1] RSPM (R 4.3.0)
+##  tibble        3.2.1   2023-03-20 [1] CRAN (R 4.3.2)
+##  tzdb          0.4.0   2023-05-12 [1] RSPM (R 4.3.0)
+##  urlchecker    1.0.1   2021-11-30 [1] RSPM (R 4.3.0)
+##  usethis       2.2.3   2024-02-19 [1] RSPM (R 4.3.0)
+##  utf8          1.2.4   2023-10-22 [1] RSPM (R 4.3.0)
+##  vctrs         0.6.5   2023-12-01 [1] RSPM (R 4.3.0)
+##  xfun          0.44.4  2024-06-11 [1] Github (yihui/xfun@9da62cc)
+##  xml2          1.3.6   2023-12-04 [1] RSPM (R 4.3.0)
+##  xtable        1.8-4   2019-04-21 [1] RSPM (R 4.3.0)
+##  yaml          2.3.8   2023-12-11 [1] RSPM (R 4.3.0)
 ## 
-## [1] /usr/local/lib/R/site-library
-## [2] /usr/local/lib/R/library
+##  [1] /usr/local/lib/R/site-library
+##  [2] /usr/local/lib/R/library
+## 
+## ──────────────────────────────────────────────────────────────────────────────
 ```
 
 <!-- Author information -->