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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 646 369

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 311 81

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 311 80

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 253 148

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 146 91

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 117 21

Repositories

Showing 10 of 185 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 84 MIT 8 101 3 Updated Jan 14, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 646 GPL-2.0 369 77 (1 issue needs help) 9 Updated Jan 14, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 39 Apache-2.0 1 18 3 Updated Jan 14, 2025
  • ccn-software-jan-2025 Public

    Materials for CCN software workshop at Flatiron, Jan 2025

    flatironinstitute/ccn-software-jan-2025’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Jan 14, 2025
  • wasmlets Public
    flatironinstitute/wasmlets’s past year of commit activity
    TypeScript 1 BSD-3-Clause 0 1 0 Updated Jan 14, 2025
  • web-wavelets-benchmarking Public

    Wasmlets vs Pyodide vs discrete-wavelets benchmark

    flatironinstitute/web-wavelets-benchmarking’s past year of commit activity
    TypeScript 0 1 0 0 Updated Jan 14, 2025
  • CryoLike Public
    flatironinstitute/CryoLike’s past year of commit activity
    Python 7 MIT 2 3 1 Updated Jan 14, 2025
  • neurorse-workshops Public

    Built workshop materials for the NeuroRSE packages

    flatironinstitute/neurorse-workshops’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 13, 2025
  • spreadkernel Public

    Small library that smears non-uniformly distributed points onto a uniform grid, via a user supplied spreading kernel. This project is supported by the Simons Foundation's Flatiron Institute.

    flatironinstitute/spreadkernel’s past year of commit activity
    C++ 0 0 0 0 Updated Jan 13, 2025
  • neuroRSE Public

    Website for CCN's neuroRSE group

    flatironinstitute/neuroRSE’s past year of commit activity
    CSS 1 MIT 0 0 0 Updated Jan 12, 2025
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