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Validate IO in SortBam to provide nicer exceptions

Codecov / codecov/project failed May 30, 2024 in 1s

95.61% (-0.02%) compared to d5b38ca

View this Pull Request on Codecov

95.61% (-0.02%) compared to d5b38ca

Details

Codecov Report

Attention: Patch coverage is 0% with 3 lines in your changes are missing coverage. Please review.

Project coverage is 95.61%. Comparing base (d5b38ca) to head (adb0693).

Files Patch % Lines
...c/main/scala/com/fulcrumgenomics/bam/SortBam.scala 0.00% 3 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #994      +/-   ##
==========================================
- Coverage   95.62%   95.61%   -0.02%     
==========================================
  Files         126      126              
  Lines        7364     7365       +1     
  Branches      500      510      +10     
==========================================
  Hits         7042     7042              
- Misses        322      323       +1     

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