Merge pull request #320 from Delphine-L/VGP0

Addition of Vgp0 : assembly of mitochondrial genome

workflows/VGP-assembly-v2/Mitogenome-assembly-VGP0/.dockstore.yml

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+version: 1.2
+workflows:
+- name: main
+  subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /Mitogenome-Assembly-VGP0.ga
+  testParameterFiles:
+  - /Mitogenome-Assembly-VGP0-tests.yml
+  authors:
+  - name: VGP
+    url: https://vertebrategenomeproject.org
+  - name: Galaxy

workflows/VGP-assembly-v2/Mitogenome-assembly-VGP0/CHANGELOG.MD

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+# Changelog
+
+
+## [0.1] - 2024-01-03
+
+- Creation of workflow for Mitochondrial DNA assembly with MitoHifi.

workflows/VGP-assembly-v2/Mitogenome-assembly-VGP0/Mitogenome-Assembly-VGP0-tests.yml

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+- doc: Test outline for Mitogenome-Assembly-VGP0
+  job:
+    Collection of Pacbio Data:
+      class: Collection
+      collection_type: list
+      elements:
+      - class: File
+        identifier: pacbio_01.fasta.gz
+        location: https://zenodo.org/records/10454765/files/pacbio_01.fasta.gz?download=1
+    Species name (latin name): Theretra latreillii lucasii
+    Email adress: [email protected]
+  outputs:
+    contigs_stats:
+      asserts:
+        has_text:
+          text: "15316	36	True"
+    mitogenome_coverage:
+      asserts:
+        has_size:
+          value: 19000
+          delta: 2000
+    mitogenome_annotation:
+      asserts:
+        has_size:
+          value: 68000
+          delta: 5000
+    mitogenome_genbank:
+      assert:
+        has_n_line:
+          n: 480