VGP hifiasm solo

workflows/VGP-assembly-v2/VGP-WF3-Assembly/.dockstore.yml

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+version: 1.2
+workflows:
+- name: main
+  primaryDescriptorPath: /Assembly-(WF3).ga
+  subclass: Galaxy
+  testParameterFiles:
+  - /Assembly-(WF3)-tests.yml

workflows/VGP-assembly-v2/VGP-WF3-Assembly/Assembly-(WF3)-tests.yml

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+- doc: Test outline for Assembly-(WF3)
+  job:
+    Meryl Database:
+      class: File
+      location: https://www.dropbox.com/scl/fi/5jn73x616vmasf92dsxv0/Meryl-db.meryldb?rlkey=72vxi05ea3yqemxx2loupih70&dl=1
+      filetype: meryldb
+    Genomescope Summary:
+      class: File
+      location: https://www.dropbox.com/scl/fi/ysi3736m37ah34sw3k1ex/GenomeScope_Summary.txt?rlkey=2ks66rdhqcmpn4pdchziwyv0r&dl=1
+      filetype: txt
+    Pacbio Reads Collection:
+      class: Collection
+      collection_type: list
+      elements:
+      - class: File
+        identifier: yeast_reads_sub1.fastq.gz
+        location: https://www.dropbox.com/scl/fi/yqcm8bk4jws3iy4y9m24h/yeast_reads_sub1.fastq.gz?rlkey=p409i94qa24kbc93afcssffoi&dl=1
+    Bits for Hifiasm bloom filter: 32
+    SAK input file (Optional): null
+    Name of primary assembly: Primary
+    Name of alternate assembly: Alternate
+  outputs:
+    Hifiasm Primary assembly:
+      asserts:
+        has_n_lines:
+          n: 174
+    HIfiasm Alternate assembly:
+      asserts:
+        has_n_lines:
+          n: 4
+    Assembly Stats on Alternate Assembly:
+      asserts:
+        has_line:
+          line: "# scaffolds	2"
+    Estimated Genome size: 2288021
+    Assembly Stats on Primary assembly:
+      asserts:
+        has_line:
+          line: "# scaffolds	87"
+    Nx Plot:
+      asserts:
+        has_size: 
+          value : 60000
+          delta: 10000