use engine python

hivlab · Jan 18, 2021 · 82c5972 · 82c5972
1 parent 611f49c
commit 82c5972
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/.tests/integration/config/samples.tsv b/.tests/integration/config/samples.tsv
@@ -1,2 +1,2 @@
-sample  run fq platform
-A  A1  sars-cov2-reads.fq   ILLUMINA
+sample run fq platform
+A A1 sars-cov2-reads.fq ILLUMINA
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -18,7 +18,7 @@ validate(config, "schemas/config.schema.yaml")
 
 
 # Load runs and groups
-df = pd.read_csv(config["samples"], sep=None, dtype=str).set_index(
+df = pd.read_csv(config["samples"], sep=None, dtype=str, engine="python").set_index(
     ["sample", "run"], drop=False
 )
 validate(df, "schemas/samples.schema.yaml")