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Update README.md
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tpall authored Feb 23, 2021
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Expand Up @@ -54,23 +54,6 @@ A | A1 | /path/to/A1.fq | ILLUMINA
A | A2 | /path/to/A2.fq | ILLUMINA
B | B1 | /path/to/B1.fq | ILLUMINA


## Creating samples metadata table
(Optional) To include sample collection date/year to FASTA consensus sequence headers, prepare `config/sample_metadata.csv` file (see below) and add metadata file path to `config/config.yaml`:

```yaml
metadata:
file: config/sample_metadata.csv
collection_date: collection_date
```
sample | collection_date
-------|-----
A | 2021-02-01
A | 2021-02-01
B | 2020
## Download databases
(Optional) Human and rRNA sequence databases for FastQ Screen. In absence of databases fastq screen rule will be skipped.

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