now download the large files from another git repository

iurnus · Jan 14, 2020 · 63122cc · 63122cc
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commit 63122cc
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Showing 9 changed files with 36 additions and 29 deletions.
diff --git a/coupler/L3.C2.coupled_CA2018_ring/runCase.init/Allclean b/coupler/L3.C2.coupled_CA2018_ring/runCase.init/Allclean
@@ -22,3 +22,4 @@ rm -rf data.*
 rm -rf eedata *_data run-off* CAM* bathy*
 rm -rf update*.m
 rm -rf namelist.input
+rm -rf large_files
diff --git a/coupler/L3.C2.coupled_CA2018_ring/runCase.init/Allrun b/coupler/L3.C2.coupled_CA2018_ring/runCase.init/Allrun
@@ -1,11 +1,15 @@
 #!/bin/bash
 
 WRF_DIR=${SKRIPS_DIR}/WRFV412_AO/
-export CPL_FOLDER='/project/rus043_data/ar_2018_forecast/'
-ln -s ${CPL_FOLDER}/save_nc/fine_loop_3911/2018_0127/met_em.d01.2018-01-2[6-9]*.nc .
-ln -s ${CPL_FOLDER}/save_nc/fine_loop_3911/2018_0127/met_em.d01.2018-01-3[0-9]*.nc .
-ln -s ${CPL_FOLDER}/save_nc/fine_loop_3911/2018_0127/met_em.d01.2018-02-0[1-2]*.nc .
-# cp ../save_nc/*.nc .
+
+# export CPL_FOLDER='/project/rus043_data/ar_2018_forecast/'
+# ln -s ${CPL_FOLDER}/save_nc/fine_loop_3911/2018_0127/met_em.d01.2018-01-2[6-9]*.nc .
+# ln -s ${CPL_FOLDER}/save_nc/fine_loop_3911/2018_0127/met_em.d01.2018-01-3[0-9]*.nc .
+# ln -s ${CPL_FOLDER}/save_nc/fine_loop_3911/2018_0127/met_em.d01.2018-02-0[1-2]*.nc .
+
+git clone https://github.com/iurnus/scripps_kaust_large_files.git large_files
+unzip 'large_files/L3C2_case/*.zip'
+
 cp ../caseInput/* .
 cp ${WRF_DIR}/main/real.exe .
 cp ${WRF_DIR}/main/wrf.exe .

diff --git a/coupler/L3.C2.coupled_CA2018_shaheen/coupledCode/Allmake.sh b/coupler/L3.C2.coupled_CA2018_shaheen/coupledCode/Allmake.sh
@@ -1,8 +1,8 @@
 #!/bin/sh
 
-WRF_DIR=/home/x_sunr/scripps_kaust_model_github/WRFV412_AO_01/
-ESMF_DIR=/home/x_sunr/scripps_kaust_model_github/esmf/
-COUPLER_DIR=/home/x_sunr/scripps_kaust_model_github/coupler/
+WRF_DIR=$SKRIPS_DIR/WRFV412_AO/
+ESMF_DIR=$SKRIPS_DIR/esmf/
+COUPLER_DIR=$SKRIPS_DIR/coupler/
 
 export ESMFMKFILE=$ESMF_DIR/lib/libg/Unicos.intel.64.mpi.default/esmf.mk
 

diff --git a/coupler/L3.C2.coupled_CA2018_shaheen/coupledCode/wrflib.mk b/coupler/L3.C2.coupled_CA2018_shaheen/coupledCode/wrflib.mk
@@ -1,5 +1,5 @@
-WRF_DIR=/home/x_sunr/scripps_kaust_model_github/WRFV412_AO_01/
-ESMF_DIR=/home/x_sunr/scripps_kaust_model_github/esmf/
+WRF_DIR=${SKRIPS_DIR}/WRFV412_AO/
+ESMF_DIR=${SKRIPS_DIR}/esmf/
 
 WRF_INC = \
    -I${WRF_DIR}dyn_em \

diff --git a/coupler/L3.C2.coupled_CA2018_shaheen/install.sh b/coupler/L3.C2.coupled_CA2018_shaheen/install.sh
@@ -1,19 +1,19 @@
 #!/bin/sh
-export MPI_HOME=/opt/cray/pe/mpt/7.7.0/gni/mpich-intel/16.0/include/
+export MITGCM_DIR=${SKRIPS_DIR}/MITgcm_c67m
 
 
-read -e -p "WRF412 (with OA coupling) location? :" -i "$HOME/scripps_kaust_model_github/WRFV412_AO_01/" wrfLocation
-read -e -p "ESMF location? :" -i "$HOME/scripps_kaust_model_github/esmf/" esmfLocation
-read -e -p "MITgcm location? :" -i "$HOME/scripps_kaust_model_github/MITgcm_c67m/" MITGCM_DIR
-read -e -p "COUPLER location? :" -i "$HOME/scripps_kaust_model_github/coupler/" couplerLocation
-sed -i "1s@.*@WRF_DIR=$wrfLocation@" coupledCode/wrflib.mk
-sed -i "2s@.*@ESMF_DIR=$esmfLocation@" coupledCode/wrflib.mk
-sed -i "3s@.*@WRF_DIR=$wrfLocation@" coupledCode/Allmake.sh
-sed -i "4s@.*@ESMF_DIR=$esmfLocation@" coupledCode/Allmake.sh
-sed -i "5s@.*@COUPLER_DIR=$couplerLocation@" coupledCode/Allmake.sh
-sed -i "3s@.*@WRF_DIR=$wrfLocation@" runCase.init/Allrun
-sed -i "3s@.*@WRF_DIR=$wrfLocation@" runCase/Allrun
-sed -i "3s@.*@WRF_DIR=$wrfLocation@" runWRFtest/Allrun
+read -e -p "WRF412 (with OA coupling) location? :" -i "$SKRIPS_DIR/WRFV412_AO/" wrfLocation
+read -e -p "ESMF location? :" -i "$SKRIPS_DIR/esmf/" esmfLocation
+read -e -p "MITgcm location? :" -i "$SKRIPS_DIR/MITgcm_c67m/" MITGCM_DIR
+read -e -p "COUPLER location? :" -i "$SKRIPS_DIR/coupler/" couplerLocation
+# sed -i "1s@.*@WRF_DIR=$wrfLocation@" coupledCode/wrflib.mk
+# sed -i "2s@.*@ESMF_DIR=$esmfLocation@" coupledCode/wrflib.mk
+# sed -i "3s@.*@WRF_DIR=$wrfLocation@" coupledCode/Allmake.sh
+# sed -i "4s@.*@ESMF_DIR=$esmfLocation@" coupledCode/Allmake.sh
+# sed -i "5s@.*@COUPLER_DIR=$couplerLocation@" coupledCode/Allmake.sh
+# sed -i "3s@.*@WRF_DIR=$wrfLocation@" runCase.init/Allrun
+# sed -i "3s@.*@WRF_DIR=$wrfLocation@" runCase/Allrun
+# sed -i "3s@.*@WRF_DIR=$wrfLocation@" runWRFtest/Allrun
 
 # build the MITGCM as an executable
 mkdir build_mit code_mit
@@ -36,7 +36,7 @@ cp mitSettingCA/* code/ # copy the scripts to install MITGCM
 cd build
 ./makescript_fwd.sio.shaheen ${MITGCM_DIR} # install MITGCM, generate *.f files
 
-cp $MPI_HOME/mpif* . 
+cp ${SKRIPS_MPI_DIR}/include/mpif* . 
 ./mkmod.sh ocn # install MITGCM as a library, generate *.mod files
 cd ..
 

diff --git a/coupler/L3.C2.coupled_CA2018_shaheen/runCase.init/Allclean b/coupler/L3.C2.coupled_CA2018_shaheen/runCase.init/Allclean
@@ -23,3 +23,4 @@ rm -rf eedata *_data run-off* CAM* bathy*
 rm -rf update*.m
 rm -rf *.py
 rm -rf job*
+rm -rf large_files
diff --git a/coupler/L3.C2.coupled_CA2018_shaheen/runCase.init/Allrun b/coupler/L3.C2.coupled_CA2018_shaheen/runCase.init/Allrun
@@ -1,9 +1,10 @@
 #!/bin/bash
 
-WRF_DIR=/home/x_sunr/scripps_kaust_model_github/WRFV412_AO_01/
-export CPL_FOLDER='/project/k1325/ar_project_wrf_nc/test_nc'
+WRF_DIR=${SKRIPS_DIR}/WRFV412_AO/
+
+git clone https://github.com/iurnus/scripps_kaust_large_files.git large_files
+unzip 'large_files/L3C2_case/*.zip'
 
-ln -s ${CPL_FOLDER}/met_em.d01.2018-01-2[6-9]*.nc .
 ln -sf ../caseInput/* .
 cp ${WRF_DIR}/main/real.exe .
 cp ${WRF_DIR}/main/wrf.exe .

diff --git a/coupler/L3.C2.coupled_CA2018_shaheen/runCase/Allrun b/coupler/L3.C2.coupled_CA2018_shaheen/runCase/Allrun
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-WRF_DIR=/home/x_sunr/scripps_kaust_model_github/WRFV412_AO_01/
+WRF_DIR=${SKRIPS_DIR}/WRFV412_AO/
 
 cp ${WRF_DIR}/main/wrf.exe .
 cp ../coupledCode/esmf_application .

diff --git a/coupler/L3.C2.coupled_CA2018_shaheen/runWRFtest/Allrun b/coupler/L3.C2.coupled_CA2018_shaheen/runWRFtest/Allrun
@@ -1,6 +1,6 @@
 #!/bin/bash
 
-WRF_DIR=/home/x_sunr/scripps_kaust_model_github/WRFV412_AO_01/
+WRF_DIR=${SKRIPS_DIR}/WRFV412_AO/
 
 cp ${WRF_DIR}/main/wrf.exe .
 cp ../runCase/*.TBL .