Updated GFF3 GTF names

kcleal · Jul 31, 2024 · 034211f · 034211f
1 parent a930c1c
commit 034211f
Showing 1 changed file with 8 additions and 4 deletions.
diff --git a/src/hts_funcs.cpp b/src/hts_funcs.cpp
@@ -1821,19 +1821,23 @@ namespace HGW {
                         std::vector<std::string> keyval = Utils::split(item, '=');
                         if (keyval[0] == "ID") {
                             rid = keyval[1];
+                        } else if (keyval[0] == "Name") {
+                            parent = keyval[1];
+		            rid = keyval[1];
+                            break;
                         }
                         else if (keyval[0] == "Parent") {
                             parent = keyval[1];
                             break;
                         }
                     } else {
                         std::vector<std::string> keyval = Utils::split(item, ' ');
-                        if (keyval[0] == "transcript_id") {
-                            rid = keyval[1];
-                        }
-                        else if (keyval[0] == "gene_id") {
+                        if (keyval[0] == "gene_id") {
                             parent = keyval[1];
+			    rid = keyval[1];
                             break;
+                        } else if (keyval[0] == "transcript_id") {
+                            rid = keyval[1];
                         }
                     }
                 }