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This was referenced Oct 20, 2023
Systematic use of base:: (e.g. base::open(), base::isOpen(), base::close(), etc...) when operating on connection objects in readGFF() code to avoid the annoying messages (Found more than one class "file" in cache etc...) when more than one package promotes connection objects to S4 objects with setOldClass().
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Thanks so much for your support on this Hervé. It is much appreciated. |
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readGFF()introduced by PR Explicitly use 'BiocGenerics::connection' to prevent warning message … #79, and addresses the original issue.rtracklayer 1.61.2 successfully passed
R CMD buildandR CMD checkon my laptop (Ubuntu 23.10), nebbiolo2 (Ubuntu 22.04.3 LTS), lconway (Intel macOS 12.6.5 Monterey), and kjohnson1 (arm64 macOS 13.3.1 Ventura). I don't have access to a Windows machine to test at the moment but hopefully everything is fine there too.