adding conda

linsalrob · Sep 10, 2024 · b2b1326 · b2b1326
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commit b2b1326
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diff --git a/Workshops/COMBINE_QLD_2024.md b/Workshops/COMBINE_QLD_2024.md
@@ -208,6 +208,15 @@ For this work, we are going to use [GCA_000001405.15_GRCh38_no_alt_plus_hs38d1_a
 
 We have made this data available for you in `/storage/data/human`
 
+## Install minimap and samtools
+
+This also installs the conda channels for you in the right order!
+```
+conda config --add channels bioconda
+conda config --add channels conda-forge
+mamba create -n minimap2 minimap2 samtools
+```
+
 ## Use minimap2 and samtools to filter the human sequences