Merge pull request #71 from malariagen/GH70_add_Ag3.10_release_page

Add Ag3.10 release page

docs/_toc.yml

@@ -16,6 +16,7 @@ parts:
     - file: ag3/ag3.7
     - file: ag3/ag3.8
     - file: ag3/ag3.9
+    - file: ag3/ag3.10
     - file: ag3/cloud
     - file: ag3/download
     - file: ag3/methods

docs/ag3/ag3.0.ipynb

@@ -8,7 +8,7 @@
    "source": [
     "# Ag3.0 (Ag1000G phase 3)\n",
     "\n",
-    "The [*Anopheles gambiae* 1000 Genomes Project (Ag1000G)](https://www.malariagen.net/ag1000g) is a collaborative project using whole-genome sequencing to study genetic variation and evolution in natural populations of mosquitoes in the *Anopheles gambiae* species complex. \n",
+    "The [*Anopheles gambiae* 1000 Genomes Project (Ag1000G)](https://www.malariagen.net/project/ag1000g/) is a collaborative project using whole-genome sequencing to study genetic variation and evolution in natural populations of mosquitoes in the *Anopheles gambiae* species complex. \n",
     "\n",
     "This page provides an introduction to open data resources released as part of the third phase of the Ag1000G project, known as `Ag3.0` for short. We hope the data from `Ag3.0` will be a valuable resource for research and surveillance of malaria vectors. If you have any questions about this guide or how to use the data, please [start a new discussion](https://github.com/malariagen/vector-public-data/discussions/new) on the malariagen/vector-open-data repo on GitHub. If you find any bugs, please [raise an issue](https://github.com/malariagen/vector-public-data/issues/new/choose)."
    ]
@@ -21,7 +21,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from `Ag3.0` are released openly and can be downloaded and analysed for any purpose. The data have been released prior to publication by the Ag1000G Consortium, and are currently subject to a publication embargo described further in the [Ag1000G terms of use](https://www.malariagen.net/data/terms-use/ag1000g-terms-use). If you have any questions about the terms of use, please email data@malariagen.net."
+    "Data from `Ag3.0` are released openly and can be downloaded and analysed for any purpose. The data have been released prior to publication by the Ag1000G Consortium, and are currently subject to a publication embargo described further in the [Ag1000G terms of use](https://www.malariagen.net/data/our-approach-sharing-data/ag1000g-terms-of-use/). If you have any questions about the terms of use, please email support@malariagen.net."
    ]
   },
   {
@@ -1424,7 +1424,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.10"
+   "version": "3.10.11"
   }
  },
  "nbformat": 4,

docs/ag3/ag3.1.ipynb

@@ -10,7 +10,7 @@
     "\n",
     "The **[Ag3.1](ag3.1): _Anopheles gambiae_ data resource** contains single nucleotide polymorphism (SNP) calls, copy number variant (CNV) calls and SNP haplotypes from whole-genome sequencing of 647 mosquitoes collected in Mali from 2012 to 2015.\n",
     "\n",
-    "This project is an international collaboration between researchers at NIAID, NIH (USA), ICER (Mali) and LSTM (UK). More information about this release can be found in the [data resource website](https://www.malariagen.net/data/ag31-anopheles-gambiae-data-resource).  \n",
+    "This project is an international collaboration between researchers at NIAID, NIH (USA), ICER (Mali) and LSTM (UK). More information about this release can be found in the [data resource website](https://www.malariagen.net/data_package/ag31-anopheles-gambiae-data-resource).  \n",
     "\n",
     "This page provides an introduction to open data resources released as part of `Ag3.1`. \n",
     "\n",
@@ -32,7 +32,7 @@
     "\n",
     "The publication embargo for all data on this release will expire on the **17th of November 2025**. \n",
     "\n",
-    "If you have any questions about the terms of use, please email [data@malariagen.net](mailto:[email protected])"
+    "If you have any questions about the terms of use, please email support@malariagen.net"
    ]
   },
   {
@@ -99,7 +99,7 @@
    },
    "outputs": [],
    "source": [
-    "!pip install -qq malariagen_data"
+    "%pip install -qq malariagen_data"
    ]
   },
   {
@@ -676,7 +676,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.10"
+   "version": "3.10.11"
   }
  },
  "nbformat": 4,