Merge pull request #98 from malariagen/97-Update-TermsOfUse-in-VUGs

Update text in terms of use in VUGs for clarity

docs/af1/af1.0.ipynb

@@ -29,7 +29,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from `Af1.0` have been released prior to publication by the Phase 1 Data Release Consortium with the expectation that they will be valuable for many researchers. These data are subject to a publication embargo.\n",
+    "Data from `Af1.0` have been released prior to publication by the Phase 1 Data Release Consortium with the expectation that they will be valuable for many researchers. These data are subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "The Af1.0 data release is led by the MalariaGEN Vector Observatory Anopheles funestus Consortium. The Consortium includes researchers who have contributed samples, know-how, analyses, and expertise to the project. The Consortium has released the project data prior to publication with the expectation that they will be valuable for many researchers. In keeping with Fort Lauderdale principles, researchers outside the Consortium may use the data for their own studies, but are expected to allow the Consortium to make the first presentations and to publish the first paper(s) that include global analyses of the data. Researchers inside the Consortium are permitted to evaluate the specific samples they contributed to the project separate from the Global analyses, but are expected to submit publications on these samples at the same time as or after the Global publications are submitted.\n",
     "\n",

docs/af1/af1.1.ipynb

@@ -25,7 +25,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from this project will be made publicly available before journal publication. Unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. \n",
+    "Data from this project will be made publicly available before journal publication, subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "Although malaria is generally an endemic rather than an epidemic disease, and the focus of this project is on surveillance of disease vectors rather than pathogens, our data terms of use build on MalariaGEN's approach to data sharing, and adopt norms which have been established for rapid sharing of pathogen genomic data during disease outbreaks. The primary rationale for this approach is that malaria remains a public health emergency, where ethically appropriate and rapid sharing of genomic surveillance data can help to detect and respond to biological threats such as new forms of insecticide resistance, and to adapt malaria vector control strategies to different settings and changing circumstances.\n",
     "\n",

docs/af1/af1.2.ipynb

@@ -25,7 +25,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from this project will be made publicly available before journal publication. Unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. \n",
+    "Data from this project will be made publicly available before journal publication, subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "Although malaria is generally an endemic rather than an epidemic disease, and the focus of this project is on surveillance of disease vectors rather than pathogens, our data terms of use build on MalariaGEN's approach to data sharing, and adopt norms which have been established for rapid sharing of pathogen genomic data during disease outbreaks. The primary rationale for this approach is that malaria remains a public health emergency, where ethically appropriate and rapid sharing of genomic surveillance data can help to detect and respond to biological threats such as new forms of insecticide resistance, and to adapt malaria vector control strategies to different settings and changing circumstances.\n",
     "\n",

docs/af1/af1.3.ipynb

@@ -25,7 +25,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from this project will be made publicly available before journal publication. Unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. \n",
+    "Data from this project will be made publicly available before journal publication, subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "Although malaria is generally an endemic rather than an epidemic disease, and the focus of this project is on surveillance of disease vectors rather than pathogens, our data terms of use build on MalariaGEN's approach to data sharing, and adopt norms which have been established for rapid sharing of pathogen genomic data during disease outbreaks. The primary rationale for this approach is that malaria remains a public health emergency, where ethically appropriate and rapid sharing of genomic surveillance data can help to detect and respond to biological threats such as new forms of insecticide resistance, and to adapt malaria vector control strategies to different settings and changing circumstances.\n",
     "\n",

docs/af1/af1.4.ipynb

@@ -25,7 +25,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from this project will be made publicly available before journal publication. Unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. \n",
+    "Data from this project will be made publicly available before journal publication, subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "Although malaria is generally an endemic rather than an epidemic disease, and the focus of this project is on surveillance of disease vectors rather than pathogens, our data terms of use build on MalariaGEN's approach to data sharing, and adopt norms which have been established for rapid sharing of pathogen genomic data during disease outbreaks. The primary rationale for this approach is that malaria remains a public health emergency, where ethically appropriate and rapid sharing of genomic surveillance data can help to detect and respond to biological threats such as new forms of insecticide resistance, and to adapt malaria vector control strategies to different settings and changing circumstances.\n",
     "\n",

docs/ag3/ag3.1.ipynb

@@ -25,7 +25,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from this project will be made publicly available before journal publication. Unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. \n",
+    "Data from this project will be made publicly available before journal publication, subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "Although malaria is generally an endemic rather than an epidemic disease, and the focus of this project is on surveillance of disease vectors rather than pathogens, our data terms of use build on MalariaGEN's approach to data sharing, and adopt norms which have been established for rapid sharing of pathogen genomic data during disease outbreaks. The primary rationale for this approach is that malaria remains a public health emergency, where ethically appropriate and rapid sharing of genomic surveillance data can help to detect and respond to biological threats such as new forms of insecticide resistance, and to adapt malaria vector control strategies to different settings and changing circumstances.\n",
     "\n",

docs/ag3/ag3.10.ipynb

@@ -25,7 +25,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from this project will be made publicly available before journal publication. Unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. \n",
+    "Data from this project will be made publicly available before journal publication, subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "Although malaria is generally an endemic rather than an epidemic disease, and the focus of this project is on surveillance of disease vectors rather than pathogens, our data terms of use build on MalariaGEN's approach to data sharing, and adopt norms which have been established for rapid sharing of pathogen genomic data during disease outbreaks. The primary rationale for this approach is that malaria remains a public health emergency, where ethically appropriate and rapid sharing of genomic surveillance data can help to detect and respond to biological threats such as new forms of insecticide resistance, and to adapt malaria vector control strategies to different settings and changing circumstances.\n",
     "\n",

docs/ag3/ag3.11.ipynb

@@ -25,7 +25,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from this project will be made publicly available before journal publication. Unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. \n",
+    "Data from this project will be made publicly available before journal publication, subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "Although malaria is generally an endemic rather than an epidemic disease, and the focus of this project is on surveillance of disease vectors rather than pathogens, our data terms of use build on MalariaGEN's approach to data sharing, and adopt norms which have been established for rapid sharing of pathogen genomic data during disease outbreaks. The primary rationale for this approach is that malaria remains a public health emergency, where ethically appropriate and rapid sharing of genomic surveillance data can help to detect and respond to biological threats such as new forms of insecticide resistance, and to adapt malaria vector control strategies to different settings and changing circumstances.\n",
     "\n",

docs/ag3/ag3.12.ipynb

@@ -25,7 +25,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from this project will be made publicly available before journal publication. Unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. \n",
+    "Data from this project will be made publicly available before journal publication, subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "Although malaria is generally an endemic rather than an epidemic disease, and the focus of this project is on surveillance of disease vectors rather than pathogens, our data terms of use build on MalariaGEN's approach to data sharing, and adopt norms which have been established for rapid sharing of pathogen genomic data during disease outbreaks. The primary rationale for this approach is that malaria remains a public health emergency, where ethically appropriate and rapid sharing of genomic surveillance data can help to detect and respond to biological threats such as new forms of insecticide resistance, and to adapt malaria vector control strategies to different settings and changing circumstances.\n",
     "\n",

docs/ag3/ag3.13.ipynb

@@ -25,7 +25,7 @@
    "source": [
     "## Terms of use\n",
     "\n",
-    "Data from this project will be made publicly available before journal publication. Unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. \n",
+    "Data from this project will be made publicly available before journal publication, subject to the following publication embargo: unless otherwise stated, analyses of project data are ongoing and publications are in preparation by project partners, and it is not permitted to use project data for publication (including any type of communication with the general public) without prior permission from the originating partner studies. The publication embargo will expire 24 months after the data is integrated into the Malaria Genome Vector Observatory data repository, or earlier, if the project partner agrees to remove the embargo before the expiry date.\n",
     "\n",
     "Although malaria is generally an endemic rather than an epidemic disease, and the focus of this project is on surveillance of disease vectors rather than pathogens, our data terms of use build on MalariaGEN's approach to data sharing, and adopt norms which have been established for rapid sharing of pathogen genomic data during disease outbreaks. The primary rationale for this approach is that malaria remains a public health emergency, where ethically appropriate and rapid sharing of genomic surveillance data can help to detect and respond to biological threats such as new forms of insecticide resistance, and to adapt malaria vector control strategies to different settings and changing circumstances.\n",
     "\n",