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De-MyBinder-ification #91

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Nov 18, 2024
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De-MyBinder-ification #91

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1 change: 0 additions & 1 deletion docs/_config.yml
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Expand Up @@ -11,7 +11,6 @@ repository:
launch_buttons:
notebook_interface: "jupyterlab"
colab_url: "https://colab.research.google.com"
binderhub_url: "https://gke.mybinder.org"
html:
use_repository_button : true
use_issues_button: true
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2 changes: 1 addition & 1 deletion docs/af1/af1.0.ipynb
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"\n",
"Raw sequence reads, sequence read alignments and SNP calls are available for download from the European Nucleotide Archive (ENA). Further information on how to find and download these data is provided in the [data download guide](https://malariagen.github.io/vector-data/af1/download.html).\n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](https://malariagen.github.io/vector-data/af1/cloud.html)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](https://malariagen.github.io/vector-data/af1/cloud.html)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/af1/af1.1.ipynb
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"\n",
"Data from `Af1.1` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/af1/af1.2.ipynb
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"\n",
"Data from `Af1.2` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/af1/af1.3.ipynb
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"\n",
"Data from `Af1.3` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/af1/af1.4.ipynb
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"\n",
"Data from `Af1.4` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.0.ipynb
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Expand Up @@ -81,7 +81,7 @@
"\n",
"Raw sequence reads, sequence read alignments and SNP calls are available for download from the European Nucleotide Archive (ENA). Further information on how to find and download these data is provided in the [data download guide](download).\n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.1.ipynb
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"\n",
"Data from `Ag3.1` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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8 changes: 4 additions & 4 deletions docs/ag3/ag3.10.ipynb
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"\n",
"Data from `Ag3.10` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
Expand Down Expand Up @@ -1036,9 +1036,9 @@
"provenance": []
},
"kernelspec": {
"display_name": "developer-developer-training-nb-maintenance-mgen-9.0.0",
"display_name": "global-global-mgenv-6.0.5",
"language": "python",
"name": "conda-env-developer-developer-training-nb-maintenance-mgen-9.0.0-py"
"name": "conda-env-global-global-mgenv-6.0.5-py"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -1050,7 +1050,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.11"
"version": "3.12.6"
}
},
"nbformat": 4,
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8 changes: 4 additions & 4 deletions docs/ag3/ag3.11.ipynb
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"\n",
"Data from `Ag3.11` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
Expand Down Expand Up @@ -720,9 +720,9 @@
"provenance": []
},
"kernelspec": {
"display_name": "ahernank-ahernank-pug-dev",
"display_name": "global-global-mgenv-6.0.5",
"language": "python",
"name": "conda-env-ahernank-ahernank-pug-dev-py"
"name": "conda-env-global-global-mgenv-6.0.5-py"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -734,7 +734,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.12.5"
"version": "3.12.6"
}
},
"nbformat": 4,
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.12.ipynb
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"\n",
"Data from `Ag3.12` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.13.ipynb
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"\n",
"Data from `Ag3.13` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.2.ipynb
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Expand Up @@ -80,7 +80,7 @@
"\n",
"Data from `Ag3.2` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.3.ipynb
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Expand Up @@ -73,7 +73,7 @@
"\n",
"Data from `Ag3.3` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.4.ipynb
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"\n",
"Data from `Ag3.4` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.5.ipynb
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"\n",
"Data from `Ag3.5` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.6.ipynb
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"\n",
"Data from `Ag3.6` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.7.ipynb
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"\n",
"Data from `Ag3.7` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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2 changes: 1 addition & 1 deletion docs/ag3/ag3.8.ipynb
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"\n",
"Data from `Ag3.8` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
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8 changes: 4 additions & 4 deletions docs/ag3/ag3.9.ipynb
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"\n",
"Data from `Ag3.9` are hosted by several different services. \n",
"\n",
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [MyBinder](https://gke.mybinder.org/) and [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
"The SNP data have also been uploaded to Google Cloud, and can be analysed directly within the cloud without having to download or copy any data, including via free interactive computing services such as [Google Colab](https://colab.research.google.com/). Further information about analysing these data in the cloud is provided in the [cloud data access guide](cloud)."
]
},
{
Expand Down Expand Up @@ -1507,9 +1507,9 @@
"provenance": []
},
"kernelspec": {
"display_name": "developer-developer-training-nb-maintenance-mgen-8.7.0",
"display_name": "global-global-mgenv-6.0.5",
"language": "python",
"name": "conda-env-developer-developer-training-nb-maintenance-mgen-8.7.0-py"
"name": "conda-env-global-global-mgenv-6.0.5-py"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -1521,7 +1521,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.11"
"version": "3.12.6"
}
},
"nbformat": 4,
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