4.4.0 Release Notes

What's Changed

• Cache optimization for completed tasks by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/192
• Update execution path by @ashanhol in https://github.com/microsoft/ga4gh-tes/pull/222
• Extend CancellationToken by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/214
• Replace LazyCache with MemoryCache by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/229
• [220] Upload and download operations are now a subprocess by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/230
• Editor config adds and enforces license information by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/234
• Snap to specific dot net to fix dotnet format by @yuliadub in https://github.com/microsoft/ga4gh-tes/pull/241
• [235] Initial implementation of the root hash for uploads by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/236
• Share global options instead of recreating them multiple times by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/239
• Implement download and upload operations in TES scheduler via the TES Task runner by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/232
• Add streamable to TES input by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/244
• [237] Optimizer sets the block size dynamically. by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/247
• Implement backend parameter internal_path_prefix by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/251
• [246] 4MiB hash list for uploads by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/252
• Create batch subnet with service endpoints by default by @jsaun in https://github.com/microsoft/ga4gh-tes/pull/256
• Update issue template for code dependencies by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/257
• Use AAD integration for admin group by @jsaun in https://github.com/microsoft/ga4gh-tes/pull/263
• Use AZ CLI credentials in deployer by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/266
• Revert "Snap to specific dot net to fix dotnet format" as format bug has been fixed by @yuliadub in https://github.com/microsoft/ga4gh-tes/pull/268
• Consider a missing job as equivalent to a missing task in that job when deleting the task by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/271
• Performance testing Fixes and Enhancements by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/259
• [267] Add cross-workspace support to the Terra storage provider. by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/272
• [277] SocketException is now retriable by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/278
• Batch repository writes, improve repository scalability, and implement paged items retrieval by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/225
• Publish node task runner by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/283
• [275] Removes default storage account dependency when running in Terra by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/285
• Block Docker container IMDS access by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/286
• Fix bad merge in TesTaskPostgreSqlRepository.cs by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/291
• Create new Github build/test action and update NetworkUtility tests by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/292
• [297] Metrics file is uploaded to correct target URL by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/298
• [245] Wildcard support and refactoring of runner task outputs and inputs expansion logic by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/261
• Use Task Executor Workdir by @SharonHart in https://github.com/microsoft/ga4gh-tes/pull/281
• [303] Md5HashListProvider does not allocate extra byte array when calculating a buffer's hash list by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/304
• Prune all Docker images (not just dangling ones) in clean-executor.sh by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/301
• wrap each entry rather than wrap all the entries with && separators by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/300
• Mitigate batch docker misconfiguration by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/309
• Mitigate flakey IsPublic container image calls and include drs image when needed by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/311
• Remove unused csproj file by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/315
• [316] Use IOptions wrapper instead BatchSchedulingOptions in the Terra Storage provider by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/317
• Update src/TesApi.Web/BatchSupportedVmSizeInformation.json by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/318
• Sort the RegionsAvailable in ascending order for easier reading in BatchSupportedVmSizeInformation.json by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/321
• Always upload standard out and standard error, even on success by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/322
• Write testask to console on deployment failure by @MattMcL4475 in https://github.com/microsoft/ga4gh-tes/pull/326
• Always use URL when available when requesting SAS-token for blobs/etc by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/324
• [330] Added missing enum values to API request models to create Batch pools via WSM by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/331
• Get starttask logs and fix start-task for docker configuration by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/312
• [343] Task output file supports TES internal location in Terra by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/344
• [347] Container SAS token is generated for internal TES URLs by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/348
• Protect against command jailbreaking the executor container by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/353
• Change the way we access the start-task console logs by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/351
• Report download metrics by @BMurri in https://github.com/microsoft/ga4gh-tes/pull/355
• [356] Executor handles empty output list after resolution by @giventocode in https://github.com/microsoft/ga4gh-tes/pull/357

New Contributors

• @SharonHart made their first contribution in https://github.com/microsoft/ga4gh-tes/pull/281

Full Changelog: https://github.com/microsoft/ga4gh-tes/compare/4.3.0...4.4.0