build(ci): Upgrade pre-commit hooks (#2)

This commit contains a couple of changes of linters
- Moves section `[tool.ruff.lint]` under `[tool.ruff]` in
`pyproject.toml`, according to schema validation from [Even Better
TOML](https://marketplace.visualstudio.com/items?itemName=tamasfe.even-better-toml);
- Removes rule
[`ANN101`](https://docs.astral.sh/ruff/rules/missing-type-self/) which
has been deprecated in Ruff.
- Updates a few pre-commit hooks
  - shfmt: v3.8.0-1 ~ v3.10.0-2
  - ruff: v0.4.7 ~ v0.8.4
  - mypy: v1.11.1 ~ v1.14.0
  - clang-format: v18.1.5 ~ v19.1.5
  - cython-lint: v0.16.2 ~ v0.16.6
  - conventional commit: v2.1.1 ~ v4.0.0

.pre-commit-config.yaml

@@ -11,30 +11,30 @@ repos:
       - id: check-toml
       - id: check-added-large-files
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.4.7
+    rev: v0.8.4
     hooks:
       - id: ruff
         types_or: [python, pyi, jupyter]
         args: [--fix]
       - id: ruff-format
         types_or: [python, pyi, jupyter]
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: "v1.11.1"
+    rev: "v1.14.0"
     hooks:
       - id: mypy
         additional_dependencies: ['numpy >= 1.22', "ml-dtypes >= 0.1", "pytest"]
         args: [--show-error-codes]
   - repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: "v18.1.5"
+    rev: "v19.1.5"
     hooks:
       - id: clang-format
   - repo: https://github.com/MarcoGorelli/cython-lint
-    rev: v0.16.2
+    rev: v0.16.6
     hooks:
       - id: cython-lint
       - id: double-quote-cython-strings
   - repo: https://github.com/scop/pre-commit-shfmt
-    rev: v3.8.0-1
+    rev: v3.10.0-2
     hooks:
       - id: shfmt
   - repo: https://github.com/shellcheck-py/shellcheck-py
@@ -47,7 +47,7 @@ repos:
   #     - id: cmake-format
   #     - id: cmake-lint
   - repo: https://github.com/compilerla/conventional-pre-commit
-    rev: v2.1.1
+    rev: v4.0.0
     hooks:
       - id: conventional-pre-commit
         stages: [commit-msg]