Merge pull request #788 from l-modolo/master

update PSMN configuration to keep up with cluster changes
nf-core · Dec 19, 2024 · 077c831 · 077c831
2 parents 553f2c7 + e3a2dfc
commit 077c831
Showing 1 changed file with 26 additions and 26 deletions.
diff --git a/conf/psmn.config b/conf/psmn.config
@@ -18,47 +18,47 @@ process {
         cpus: 32,
         time: 96.h
     ]
-    executor       = 'slurm'
-    clusterOptions = "--partition=E5,Lake,Lake-flix"
+    executor = 'slurm'
+    queue = "E5,Lake"
 
-    cpus           = 1
-    memory         = 32.GB
-    time           = 24.h
+    cpus     = 1
+    memory   = 32.GB
+    time     = 24.h
 
     withLabel: 'process_single|process_single_thread|sc_tiny|sc_small|sc_medium' {
-        clusterOptions = "--partition=E5,Lake,Lake-flix"
-        cpus           = 1
-        memory         = 114.GB
-        time           = 24.h
+        queue = "Lake"
+        cpus   = 1
+        memory = 96.GB
+        time   = 24.h
     }
     withLabel: 'process_low|mc_small|process_very_low' {
-        clusterOptions = "--partition=E5,Lake,Lake-flix"
-        cpus           = 16
-        memory         = 90.GB
-        time           = 24.h
+        queue = "Lake"
+        cpus   = 16
+        memory = 80.GB
+        time   = 24.h
     }
     withLabel: 'process_medium|mc_medium' {
-        clusterOptions = "--partition=Lake,Lake-flix"
-        cpus           = 32
-        memory         = 180.GB
-        time           = 48.h
+        queue = "Lake"
+        cpus   = 32
+        memory = 180.GB
+        time   = 48.h
     }
     withLabel: 'process_high|mc_large|mc_huge|process_high_cpus|cpus_max' {
-        clusterOptions = "--partition=Lake,Lake-flix"
-        cpus           = 32
-        memory         = 370.GB
-        time           = 48.h
+        queue = "Lake"
+        cpus   = 32
+        memory = 370.GB
+        time   = 48.h
     }
     withLabel: 'process_long|process_maximum_time|process_long_parallelized' {
-        clusterOptions = "--partition=Lake"
-        time           = 96.h
+        queue = "Lake"
+        time   = 96.h
     }
     withLabel: 'process_high_memory|memory_max' {
-        clusterOptions = "--partition=Lake,Lake-flix"
-        memory         = 370.GB
+        queue = "Epyc"
+        memory = 500.GB
     }
     withLabel: gpu {
-        clusterOptions = "--partition=E5-GPU"
+        queue = "E5-GPU"
     }
 }