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fix: Request 28.GB of memory
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Technically we could probably get away with 30 on Genomics, but some of
the nodes in the normal queue have 28.GB so that's why jobs fail unexpectedly.

sinfo --format "%.10P %.10l %.6D %.6m %N"
 PARTITION  TIMELIMIT  NODES MEMORY NODELIST
     debug    2:00:00      2  32106 compute-7-6-[0-1]
   normal* 4-00:00:00    110 28076+ compute-1-8-[0-19],compute-7-2-[20-39],compute-7-3-[8-39],compute-7-6-[2-39]
  genomics 7-00:00:00     16  32106 compute-7-2-[0-15]
      128s 4-00:00:00      8 128000 compute-2-6-[16-23]
      256i 4-00:00:00     16 220000 compute-1-1-[0-15]
      256h 4-00:00:00     10 256000 compute-2-6-[1-10]
       Kim 7-00:00:00      1 128000 compute-2-4-0
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edmundmiller committed Aug 13, 2024
1 parent a49149f commit 24bd45b
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions conf/utd_ganymede.config
Original file line number Diff line number Diff line change
Expand Up @@ -22,13 +22,13 @@ singularity {
def membership = "groups".execute().text

def select_queue = { memory, cpu ->
if (memory <= 30.GB && cpu <= 16 && membership.contains('genomics')) {
if (memory <= 28.GB && cpu <= 16 && membership.contains('genomics')) {
return 'genomics,normal'
}
if (memory > 30.GB && memory <= 125.GB && cpu <= 12 && membership.contains('kim')) {
if (memory > 28.GB && memory <= 125.GB && cpu <= 12 && membership.contains('kim')) {
return 'Kim,128s'
}
if (memory > 30.GB && memory <= 125.GB && cpu <= 16) {
if (memory > 28.GB && memory <= 125.GB && cpu <= 16) {
return '128s'
}
if (memory <= 250.GB && cpu <= 28) {
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