update to using shared partitions for nf-core jobs

conf/seawulf.config

@@ -4,35 +4,23 @@ singularity {
   autoMounts = true
 }
 
-profiles {
-  40core   {
-    process {
-      execute = 'slurm'
-      max_memory = 175.GB
-      max_cpus = 40 
-      max_time = 168.h
-      maxRetries = 2
-      queue = { task.time <= 4.h ? 'short-40core' : task.time <= 48.h ? 'long-40core': task.time <= 168.h ? 'extended-40core' }
-    }  
-    params {
-      config_profile_description = 'Stony Brook University's SeaWulf cluster '24core' cluster profile profile provided by nf-core/configs.'
-      config_profile_contact = 'David Carlson (@davidecarlson)'
-      config_profile_url = 'https://it.stonybrook.edu/services/high-performance-computing'
-    }
-  }
-
-  96core {
-    process {
-      max_memory = 240.GB
-      max_cpus = 96
-      max_time = 168.h
-      maxRetries = 2
-      queue = { task.time <= 4.h ? 'short-96core' : task.time <= 48.h ? 'long-96core': task.time <= 168.h ? 'extended-96core' }
-    }
-    params {
-      config_profile_description = 'Stony Brook University's SeaWulf cluster '96core' cluster profile profile provided by nf-core/configs.'
-      config_profile_contact = 'David Carlson (@davidecarlson)'
-      config_profile_url = 'https://it.stonybrook.edu/services/high-performance-computing'
-    }
-  }
+process {
+  executor = 'slurm'
+  maxRetries = 12
+  queue = { task.time <= 4.h ? 'short-40core-shared' : task.memory >= 150.GB ? ' long-96core-shared' : task.cpus > 10 ? 'long-96core-shared' : 'long-40core-shared' }
+}
+
+params {
+  config_profile_contact = 'David Carlson (@davidecarlson)'
+  config_profile_url = 'https://it.stonybrook.edu/services/high-performance-computing'
+  config_profile_description = 'Stony Brook Universitys seaWulf cluster profile provided by nf-core/configs.'
+  max_time = 24.h
+  max_memory = 251.GB
+  max_cpus = 96
+
+}
+
+executor {
+  queueSize = 99
+  submitRateLimit = '5 sec'
 }